 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2NG626100.5.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C3H |
| Protein Properties |
Length: 260aa MW: 28325.1 Da PI: 8.5601 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG626100.5.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 17.5 | 7.3e-06 | 100 | 121 | 8 | 26 |
GGGGTS...--TTTTT-SS-SS CS
zf-CCCH 8 ffartG...tCkyGdrCkFaHg 26
+ artG C +G rC++aHg
Pavir.2NG626100.5.p 100 NLARTGaapSCVRGLRCRYAHG 121
568999999************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MDMSADRCRG WAACSGGADP SDPTTWYAWA HRGHRLWAAM ADAFWVYVYK VQRCPQAGNH 60
DWTACPYAHK GERARRRDPR SFSYLAVSCP AFRESQQQQN LARTGAAPSC VRGLRCRYAH 120
GVFELWLHPA RFRTVMCEAG LRCPRRVCFF AHFPAELRGE NDPVPLHGLP PSPAAPLSFA 180
RRIDLAMQAM PGKVRLYGGA AAAGESSSSA AAAAAPAVPP PAASPDDDNA VKDLAVQDSR 240
RASEDGGYPH FDLIKDMVL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC243226 | 0.0 | AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence. |
