PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG618200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 311aa    MW: 34363.5 Da    PI: 5.3543
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG618200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-192673148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Pavir.2NG618200.1.p 26 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLRRTGKSCRLRWLNYL 73
                         89********************************************97 PP
2Myb_DNA-binding50.35.6e-1679122146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.2NG618200.1.p  79 RGSITAQEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                          7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5932373IPR017930Myb domain
SuperFamilySSF466891.87E-3024120IPR009057Homeodomain-like
SMARTSM007171.4E-152575IPR001005SANT/Myb domain
PfamPF002496.1E-172673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-222780IPR009057Homeodomain-like
CDDcd001677.15E-132873No hitNo description
PROSITE profilePS5129423.16274128IPR017930Myb domain
SMARTSM007171.6E-1478126IPR001005SANT/Myb domain
PfamPF002497.2E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2381126IPR009057Homeodomain-like
CDDcd001671.18E-1183122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAAPDQREMM MSSNEESSVA PGDLCRGPWT VEEDLLLVNY IAAHGEGRWN ALARCAGLRR  60
TGKSCRLRWL NYLRPDLRRG SITAQEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKHARQ LNCDVNSQRF KDLMRYLWMP RLLERIGDDA RATATPPHLP AGPVDDVEVE  180
LSCTTAASSS SVSTPTDGTQ QQQQQLVSPP APPATSAFGE SAPSGYDGSY SSYSNTGTMW  240
DTLCHPPQTD YHPTTAHLEA AACSWSDESL LAPGLSLPYG DMGMVGLPEL ADTMWGAGAD  300
DLWYTQIMGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25231264106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG618200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-141HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802225.11e-173transcription factor MYB2-like
TrEMBLA0A2S3H5401e-171A0A2S3H540_9POAL; Uncharacterized protein
TrEMBLA0A2T7F0A21e-171A0A2T7F0A2_9POAL; Uncharacterized protein
STRINGPavir.Ba00256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-80myb domain protein 112