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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG616300.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 261aa MW: 28549.3 Da PI: 10.2139 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG616300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 53.6 | 5e-17 | 172 | 215 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
+r++r++kNRe+A rsR+RK+a++ eLe+kv++Le+eN++L+ +l
Pavir.2NG616300.2.p 172 RRQKRMIKNRESAARSRARKQAYTNELENKVAQLEEENQRLR-KL 215
79***************************************9.44 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 261 aa
Download sequence Send
to blast |
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETQLGEPLR SMNLGDLLRT VLPAGPATQP 60 APAAKKTVDE VWRDIQSASG ARQPTMGEMT LEDFLSRAGV TVDAGPHWLH QYPPPQQYVV 120 PLGPGAGPAV DAVYRDGVGV GVGVFLSQVA GRKRGAAAAV GGDGVVERTV ERRQKRMIKN 180 RESAARSRAR KQAYTNELEN KVAQLEEENQ RLRKLKMLPP LEPPPEHEQR PVHQPEHERR 240 PVAQPEEAKQ PLRRRNSATF *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 151 | 174 | RKRGAAAAVGGDGVVERTVERRQK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT033247 | 1e-145 | BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds. |
GenBank | BT055475 | 1e-145 | BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds. |
GenBank | KJ728208 | 1e-145 | KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds. |