PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG616300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 28549.3 Da PI: 10.2139 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.6 | 5e-17 | 172 | 215 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r++r++kNRe+A rsR+RK+a++ eLe+kv++Le+eN++L+ +l Pavir.2NG616300.1.p 172 RRQKRMIKNRESAARSRARKQAYTNELENKVAQLEEENQRLR-KL 215 79***************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-15 | 166 | 214 | No hit | No description |
SMART | SM00338 | 3.4E-10 | 168 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.576 | 170 | 214 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 5.00E-22 | 172 | 216 | No hit | No description |
SuperFamily | SSF57959 | 2.06E-11 | 172 | 214 | No hit | No description |
Pfam | PF00170 | 1.1E-13 | 172 | 214 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 175 | 190 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETQLGEPLR SMNLGDLLRT VLPAGPATQP 60 APAAKKTVDE VWRDIQSASG ARQPTMGEMT LEDFLSRAGV TVDAGPHWLH QYPPPQQYVV 120 PLGPGAGPAV DAVYRDGVGV GVGVFLSQVA GRKRGAAAAV GGDGVVERTV ERRQKRMIKN 180 RESAARSRAR KQAYTNELEN KVAQLEEENQ RLRKLKMLPP LEPPPEHEQR PVHQPEHERR 240 PVAQPEEAKQ PLRRRNSATF * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 174 | RKRGAAAAVGGDGVVERTVERRQK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG616300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033247 | 1e-145 | BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds. | |||
GenBank | BT055475 | 1e-145 | BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds. | |||
GenBank | KJ728208 | 1e-145 | KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799932.1 | 1e-144 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Refseq | XP_025799933.1 | 1e-144 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Refseq | XP_025799934.1 | 1e-144 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Swissprot | Q9C5Q2 | 1e-52 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A2T7F0D1 | 1e-143 | A0A2T7F0D1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00263.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4441 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 2e-39 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG616300.1.p |
Publications ? help Back to Top | |||
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