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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG603900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 344aa MW: 36427.5 Da PI: 7.1883 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG603900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
Pavir.2NG603900.1.p 14 RGLWSPEEDEKLMNHIAKYGHGSWSSVPKLAGLERCGKSCRLRWINYL 61
788*******************************************97 PP
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2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
Pavir.2NG603900.1.p 67 RGAFSQEEEDLIIHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111
89********************.*********.************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MARRTSGPKK KLRRGLWSPE EDEKLMNHIA KYGHGSWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGAF SQEEEDLIIH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRQRG 120 IDPATHKPLA EAAGSGRGGA AAASRARTAV FSDAELILQS SSAGKHMPPP PVTAESYVYS 180 RSISADGGAS DGSLQSLSGY NQTGDFAEAY LQDPDALQPC GPSGVPAVVL PSASSSSTLN 240 SMGGLSPAAT TATTGTDELS TQQSCSASHL PCLELGTSGY ANGATAAVDH YGAALDELKW 300 SDYVFDGYGG GAQYQQGQCI YGDSKDAVQF VDASGLGSSW CLN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034016 | 1e-170 | BT034016.1 Zea mays full-length cDNA clone ZM_BFc0036C19 mRNA, complete cds. |
GenBank | BT035399 | 1e-170 | BT035399.1 Zea mays full-length cDNA clone ZM_BFb0059D04 mRNA, complete cds. |
GenBank | BT040989 | 1e-170 | BT040989.1 Zea mays full-length cDNA clone ZM_BFc0162L22 mRNA, complete cds. |
GenBank | BT067525 | 1e-170 | BT067525.1 Zea mays full-length cDNA clone ZM_BFc0072I17 mRNA, complete cds. |
GenBank | KJ727614 | 1e-170 | KJ727614.1 Zea mays clone pUT5525 MYB transcription factor (MYB23) mRNA, partial cds. |