PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 322aa MW: 34089 Da PI: 8.4664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG596200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g+W++++ + g+ R+ k+c++rw +yl Pavir.2NG596200.1.p 14 KGPWTPEEDLVLVSYIQEHGPGNWRAVPTRTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.3	2.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Pavir.2NG596200.1.p 67 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.964	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.91E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-16	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.609	66	116	IPR017930	Myb domain
Pfam	PF00249	5.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.68E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVRPPCCDKE GVKKGPWTPE EDLVLVSYIQ EHGPGNWRAV PTRTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKRKLQSGG 120 DGAAKPPAHR PASSSKGQWE RRLQTDIDMA RRALREALTP LGNLKPQQHD GVDAAGASTG 180 GAGGGDSPAS SSSGASLCSP SVAAPGPYVL TTENISRMLD GWAGGRKGRG GGSAGPGTPG 240 GAESASTGSS DASEVSYGGA GVASAAPPAA RALSEYERKP AVAAQQMPLS ALESWLFDDD 300 SHFHQVQSAS LLDVPPMDYQ F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-26	14	116	4	105	C-Myb DNA-Binding Domain
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	231	GGRKGRGGG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in germinating seeds, rosette and cauline leaves, flower buds, open flowers, stems and developing siliques. {ECO:0000269\|PubMed:25305760}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG596200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955475	0.0	EU955475.1 Zea mays clone 1533591 MYB94 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799604.1	0.0	transcription factor MYB94-like
Swissprot	Q9SN78	2e-96	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A3L6TG02	0.0	A0A3L6TG02_PANMI; Transcription factor MYB30-like
STRING	Si030560m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-90	myb domain protein 94

Link Out ? help Back to Top
Phytozome	Pavir.2NG596200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]