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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG595200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1028aa MW: 114381 Da PI: 5.7953 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.8 | 1.6e-56 | 21 | 136 | 2 | 117 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een Pavir.2NG595200.1.p 21 LEAQNRWLRPNEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEEN 110 5679************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++fqrr+ywlLee + +ivlvhyle Pavir.2NG595200.1.p 111 ENFQRRTYWLLEEGFMNIVLVHYLEI 136 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.881 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.9E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.9E-51 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.7E-6 | 440 | 527 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00782 | 440 | 528 | No hit | No description |
Pfam | PF01833 | 2.1E-5 | 441 | 514 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.28E-17 | 441 | 527 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 2.05E-14 | 619 | 731 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.8E-18 | 624 | 734 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.62E-18 | 625 | 733 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.82 | 639 | 733 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.7E-8 | 645 | 734 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.14 | 672 | 704 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.19 | 672 | 704 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 290 | 711 | 740 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.92E-8 | 845 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.919 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 848 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.688 | 870 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 8.4E-5 | 872 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
MAEIRKYAMS NQAPDIPQIL LEAQNRWLRP NEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL 120 LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSADSP ACSNSFASQS QVASQSMDAE 180 SPISGQISEY EDAETDNCRA SSRYHPFTEM QQPVDGIMMD NLLGASAPSV SVNNLGYLGE 240 MQPTPANFNN HFVTHNDVST AFSETAAGLR GGPRSSIDSV RFAEPYPEYP GGFMEPTLYS 300 SVATVGNNLD DSLKTFMSEA LYTNNLTQKE VDALSAAGIT SSQADNDGYT DQGARYPLLK 360 QSSLDPFKIE PDGLKKFDSF SRWMSNELPE VADLDIKSSS DAFWSTTETV NVADGSSMPI 420 NEQLDAFVVS PSLSQDQLFS IIDVSPSWAY NGTKTKVIIT GTFLAKKEDV ENCRWSCMFG 480 DVEVSAEVLV DGSLRCYTPV HHSGRVPFYV TCSNRVACSE VREFEFRDSE THYMDTSDLH 540 TTGINEMHLH IRLDKLLSLG PEDYEKYVLS NGNKSELIDT INSLMLDDKL SNLALPSDEK 600 ELSTVRDLNL EKQVKEKLYY WLIHKIHDDG KGPNVLGKEG QGVIHLVAAL GYDWAVKPIV 660 AAGVNVNFRD IRGWTALHWA ASCGRERTVG ALIANGAASG ALTDPTQQFP SGRTPADLAS 720 ENGHKGIAGF LAESALTSHL SALTLKESQG GNVEEICGLA AAEDFAEPSS AQLACVDSQA 780 ESLKDSLGAV RKSTQAAARI FQAFRVESFH RKKVIEYGDD DCGLSDERTL SLISLKNAKP 840 GHSDMPMHSA AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKNY RKVVWSVGIV 900 EKVILRWRRK RRGLRGFQPE KQLEGPSSQI QPVKSEAEDE YDFLKDGRRQ AEGRLQRALA 960 RVHSMTQYPE ARDQYRRLQN CVNELQESQA MQDRMLSDTA GADGNDLMAE LEELCRGDGD 1020 APMSTIS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.30623 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG595200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800735.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
TrEMBL | A0A2T7EYS2 | 0.0 | A0A2T7EYS2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00386.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG595200.1.p |