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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG571000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 20484.1 Da PI: 9.3649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk F + L H +H Pavir.2NG571000.1.p 51 FRCPLCGKAFASYQALGGHKASH 73 89**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.4E-12 | 50 | 75 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.86E-7 | 51 | 73 | No hit | No description |
SMART | SM00355 | 0.011 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 51 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.86E-7 | 109 | 136 | No hit | No description |
Pfam | PF13912 | 2.5E-8 | 113 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDQDEYLSLC LMALAAACQQ AGATATRRPH GVAAPSSSAA ATPPAELPLH FRCPLCGKAF 60 ASYQALGGHK ASHRKTPVAA GGGASYGAAA PLFHQKEATA EASSASGSGG AGRHVCTVCR 120 RGFETGQALG GHKRFHYLHG PSVSASLPTA AGSGAVGGFD LNLVPLVPEI GSAGVRRRGE 180 DDEVQSPLPL PPKKPRRPSN SA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG571000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801760.1 | 4e-88 | zinc finger protein 36-like | ||||
TrEMBL | A0A2T7EY46 | 1e-93 | A0A2T7EY46_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01050.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14898 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-19 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG571000.1.p |