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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG565400.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 584aa MW: 62986.6 Da PI: 5.3491 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG565400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 314.8 | 1.9e-96 | 177 | 582 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPi 90
+lLlecA+av+++d +++q+l++ l+elasp+gd q+la yf+ +L arl+ s++++ ++l++ +++++ s +++ + l f+e+sP+
Pavir.2NG565400.1.p 177 SQLLLECARAVAARDSQRVQQLMWMLNELASPYGDVEQKLANYFLPGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPW 265
589************************************************************99888744.44444444446******* PP
GRAS 91 lkfshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLak 167
f+h++aN aIle++ ++ +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++ ++ ++e+g+r++k
Pavir.2NG565400.1.p 266 SSFGHVAANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSAAPSaptaaVQRVMREIGQRMEK 355
**************987766667778999************************889***********988889999999*********** PP
GRAS 168 fAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse. 251
fA+ +gvpf+f+++++ +l++l+l++L+++ a+aVn+v +l ++ ++ + rd++ + +++l P+vv+vve+ead+ +
Pavir.2NG565400.1.p 356 FARLMGVPFSFRAVHHAgDLAELDLDALDLRDggaTTAVAVNCVNSLRGVV--PGGARR-RDAFTSSLRRLDPRVVTVVEEEADLvA-Sd 441
*************97767**************888889************9..555555.99**********************954.44 PP
GRAS 252 .............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
Fl+ f e l+++sa +dsle+++p++s+er +Er gr+iv++v+c +e+ er+et+++W +r+++aGF+pv+
Pavir.2NG565400.1.p 442 pgaseeqdgdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVA 530
8999**********************************************.*************************************** PP
GRAS 329 lsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
+se++a+++++llr++ +g+++ + + ++l Wk++pLv++SaWr
Pavir.2NG565400.1.p 531 FSEDVADDVRSLLRRYR-EGWSMRDAclddsapGAGVFLAWKEQPLVWASAWR 582
*****************.88888844445555466777**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 584 aa
Download sequence Send
to blast |
MDTLFRLVSL QASEQQQQSA SYNSRSTTSS GSRSSSHQTN ASYNYYYHSN SSGGGGQYYY 60
GQQHQQYYLE PYQQEECGNA HHLYMDEDFS SSSSSRQHFH SHGAAVQPPT SSVATAPTPP 120
LSTSSTAAGA AHALFESADL SFPPDLNLDF SSPASSSGGG AASSAALGGG GGGRWASQLL 180
LECARAVAAR DSQRVQQLMW MLNELASPYG DVEQKLANYF LPGLFARLTA SGPRTLRTLA 240
AASDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASSE PQRFHILDLS 300
NTFCTQWPTL LEALATRSAD DTPHLSITTV VSAAPSAPTA AVQRVMREIG QRMEKFARLM 360
GVPFSFRAVH HAGDLAELDL DALDLRDGGA TTAVAVNCVN SLRGVVPGGA RRRDAFTSSL 420
RRLDPRVVTV VEEEADLVAS DPGASEEQDG DTEAAFLKVF GEGLRFFSAY MDSLEESFPK 480
TSNERLALER GAGRAIVDLV SCPASESMER RETAASWARR MRSAGFSPVA FSEDVADDVR 540
SLLRRYREGW SMRDACLDDS APGAGVFLAW KEQPLVWASA WRP*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT067328 | 0.0 | BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds. |
