PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG564900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HRT-like
Protein Properties Length: 578aa    MW: 62731.8 Da    PI: 9.0538
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG564900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.31.1e-17314343231
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          CGv ledGs C ++Pv+gRKRC  HKG+R+
  Pavir.2NG564900.1.p 314 CGVVLEDGSSCLEHPVEGRKRCSSHKGRRV 343
                          *****************************7 PP
2HRT-like51.41.8e-16541570130
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                          +CG+++ dGs+C+++P++gRKRC+ HKG+R
  Pavir.2NG564900.1.p 541 TCGARTPDGSPCMNKPIEGRKRCALHKGQR 570
                          7****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004650.008477184IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPAAAAPAPA VTTRLKREDC PRTKHDSLFS PWKVLVGPSD WEDHSAGKEG VQRYRIRNLP  60
DNFPGLYELG VAGASDEGAR ARRRDSRGVV VVYLGQADSV RARLQQYGRS GSHLDTGNSL  120
GSAGKDEVNV VTAAAGPGLF TEVFSRGYSI VFRCALMDNK QEAEKTEALL LRVFDYAWNK  180
LQNGACRREE ILLKLEQGAA SHRSSLLSRV RHMKQDIFGV KAGIKIKGSG SVNTSPGIMK  240
SMLPRVRTFV GFRPQLVNSE DSGGEAIDIS SKKISGIPCG NRQAHRRRSE GHKVKKIDVT  300
KRRTVPIQES NSFCGVVLED GSSCLEHPVE GRKRCSSHKG RRVKGSPKSS STSYPCQAEI  360
PIPRLTEALD NLDRTQEVIE SIPHLTEDLD NSDRAQESEI LPKNISVTVE ESLRQSNSIK  420
AEEVKTREAP TEDGTHDASQ DACICEEKAS LAEPESQEPQ PSGRIWFELL KAQKKSASTH  480
APRGSGSQTR MRDHATPICG AVADNGSCKM VPIAGRKVCV QDSGIEVAGA SFSRSSGWPC  540
TCGARTPDGS PCMNKPIEGR KRCALHKGQR ASCSLTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.193520.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG564900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802669.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A3L6TB250.0A0A3L6TB25_PANMI; Uncharacterized protein
STRINGPavir.Ba01074.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-63effector of transcription2