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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.2NG548700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
YABBY |
| Protein Properties |
Length: 165aa MW: 17513 Da PI: 7.3126 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG548700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 132.1 | 7e-41 | 15 | 161 | 7 | 168 |
YABBY 7 seqvCyvqCnfCntilavsvPstsl.fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95
+e++ vqCnfC til+v vP l +k+v+v+CG C +lsv+l a + +++ +++ ++ ++ +++++ +
Pavir.2NG548700.1.p 15 PERLGCVQCNFCATILLVGVPCGGLqLKTVAVQCGSCGGILSVTLPPAPPAAYSVEL------PPQEPGADPPPRDSDESSGEDRETAA- 97
799999****************987479***************99988766666553......33333333333332222222222222. PP
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
e++ p v++PPe++qr Psayn+fikeei+rika++P+i+h+eafsaa+knWah+P+i
Pavir.2NG548700.1.p 98 ------AVAENHAF---PAVMKPPERKQRTPSAYNCFIKEEIRRIKATDPNITHKEAFSAASKNWAHLPRIQQ 161
......22334444...4699*************************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 165 aa
Download sequence Send
to blast |
MASAARHPCF GGLLPERLGC VQCNFCATIL LVGVPCGGLQ LKTVAVQCGS CGGILSVTLP 60
PAPPAAYSVE LPPQEPGADP PPRDSDESSG EDRETAAAVA ENHAFPAVMK PPERKQRTPS 120
AYNCFIKEEI RRIKATDPNI THKEAFSAAS KNWAHLPRIQ QKEN*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
