 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.2NG546100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 291aa MW: 32151.3 Da PI: 8.4203 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG546100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.8 | 4.4e-06 | 262 | 284 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp+C+k F+++ +L+ H + H
Pavir.2NG546100.1.p 262 VCPKCSKAFRDPVLLVEHVEReH 284
7*****************99888 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 6.8E-13 | 4 | 57 | No hit | No description |
| PROSITE profile | PS51039 | 7.503 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 7.1E-11 | 10 | 50 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 9.1E-14 | 13 | 50 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.0023 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 2.7E-10 | 91 | 146 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 7.46E-9 | 93 | 141 | No hit | No description |
| PROSITE profile | PS51039 | 7.722 | 98 | 146 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 3.3E-8 | 101 | 139 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.11 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00355 | 0.27 | 224 | 247 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 226 | 247 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.85 | 261 | 289 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 6.3 | 261 | 284 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 263 | 284 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTTHQCPNA NMKDVTVLIC 60
PLCAQGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKQK CPVPGCRETL TFSNTIRCKD 120
CTREHCLKHR FGPDHKCPGP RTVDSGFPFV NMLRRSQKAE TRPSSSSKNS SSWWSSSLVN 180
AATNFKSSAE ARMQKLSIAT SQAFQKAKDG ISPNSSGSSG NLVEECVHCP ARFSTVGALI 240
EHVEKSHQKK QQPSRGQVTV DVCPKCSKAF RDPVLLVEHV EREHGGTSRA *
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT041206 | 0.0 | BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds. |
