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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG542700.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 405aa MW: 42774.9 Da PI: 8.8901 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG542700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.2 | 1.6e-53 | 30 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
Pavir.2NG542700.1.p 30 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 118
79****************************.88***************8888899*********************************** PP
NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
++l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
Pavir.2NG542700.1.p 119 PILAStgSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 158
***99877888***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MRSMESTDSS SGSAPPRRRQ QQQPGSAPDL PPGFRFHPTD EELVVHYLKK KAASAPLPVA 60
IIAEVDLYKF DPWELPDKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPI 120
LASTGSREKV GVKKALVFYR GKPPKGLKTN WIMHEYRLAD AAGSTTAHRP PPGAAGGGKA 180
TSLRLDDWVL CRIYKKANKL GVGDHQRSLE CEDSVEDAVV AAYHTHSAAP VVAAAGGGGA 240
HGGNYTSLLH HHNGHEDHFL DGLLTAEDAA GLSAGASSLS HLAAAARAAP SATKQLLVPS 300
STPFNWLDAP ALAILPPTKR FHDGGMSLSS PSDRNHLAAV GAGAVDNGAS AIPTFLNPLG 360
VQAAATYHHH AILGTPVPPE AAAAAAYSFQ HPYQLSGSGV NWNP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-73 | 20 | 198 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-73 | 20 | 198 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-73 | 20 | 198 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-73 | 20 | 198 | 7 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 2e-73 | 20 | 198 | 10 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 2e-73 | 20 | 198 | 7 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 2e-73 | 20 | 198 | 7 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
