PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG540200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 784aa    MW: 89663.7 Da    PI: 9.1088
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG540200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.6e-17110189190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+n Y+ e+GF +r  +s+k+ ++g +t+++ vCs+eg++++++ +         + rtgCk ++++ +++d+ w+++++++ HnH+l+
  Pavir.2NG540200.3.p 110 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 189
                          6********************9.7788*************9987665.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-13110189IPR004330FAR1 DNA binding domain
PfamPF105519.9E-29310403IPR018289MULE transposase domain
PfamPF044341.5E-4592626IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.002592627IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4602629IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MNIDLDLGVA EMIRDKFVGV DSGQIEGNGQ EGGEAGAEEV ELALEAGNVI TERRIGWTRK  60
SAREGPSERI AVNEESAITR ALSQAARNRG SPIFQHLEGT LFSSSEEARD FFNLYSWEIG  120
FGIRYGRSNK NNKGYTTRQD IVCSCEGSPR TKNCASIRTG CKVMIRLLRT SDHGWYISRV  180
STSHNHKLSE GYAEKKQWNS HSMIDPSTKY FIKKLRDNNV SIGRVCSIIG VTDSSAMNPV  240
RKETIRSLCA KVARENMADD IGKTVQLLWE MKIKDPLMEV RFKVDEKGTV KSMLWCTGKN  300
RMDYKNFGDV VTFDTTYRTN LYSLPFGIFI GVNCHFQSII FGGVLLSTET AEDFQWAFQN  360
FMEMMDGSVP ITVLTDQCAA MGKAIRTVLP GTRHRWCRWH VLKSAKKKLG KVIARHKQFK  420
SDFYNLITNE TCVDSFELSW KKLIIKYRLV KSKYMLRLYK HREKWAKPYF MSVFCAGMTS  480
TQRSESANHM LKRYIQKAAP MHLFVSKFNE FLCDRTEQEA REQHVTKMVT RRMRVGAPIE  540
EHADLVYTRA MYEKFYDELF EAGKFCVQRE DGNDRFIVSS AKLSSDGVQK KYVVTLHGED  600
FMSCQCGLYE HLGMLCRHAL KVLLHLDRQE IPKFNIMRRW TKEAVVYKAH GEQTDIASDA  660
DQMRKKALML QTLQIVHGPS PVDEQMFRNA MEALRPADQT QREDPPFDGQ YQCSLHDDAG  720
PVPLSCPPRT MKGGRPPSTG LNAWISRKDK RRTLDSSPRD PISEDWPEEE MPPSKKTRCL  780
KDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG540200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432360.0AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.J10053.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-80FAR1-related sequence 5