PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG540200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 925aa    MW: 105091 Da    PI: 8.9245
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG540200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-16251330190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+n Y+ e+GF +r  +s+k+ ++g +t+++ vCs+eg++++++ +         + rtgCk ++++ +++d+ w+++++++ HnH+l+
  Pavir.2NG540200.2.p 251 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 330
                          6********************9.7788*************9987665.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-13251330IPR004330FAR1 DNA binding domain
PfamPF105511.2E-28451544IPR018289MULE transposase domain
PROSITE profilePS5096610.002733768IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-4733767IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4743770IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MGLVHRQHQP VVELPAFERA TCIDLAVINF ALRLPPARAF GALRVLRISA TDLVRGDVGH  60
LVSTQCPRLR DLELCDVALE AANLSISSAS LGRLVLRRVS IMSKGRIDVA APMRYCQMFW  120
CPMADVPTPI DGQVSPEQEG IMNIDLDLGV AEMIRDKFVG VDSGQIEGNG QEGGEAGAEE  180
VELALEAGNV ITERRIGWTR KSAREGPSER IAVNEESAIT RALSQAARNR GSPIFQHLEG  240
TLFSSSEEAR DFFNLYSWEI GFGIRYGRSN KNNKGYTTRQ DIVCSCEGSP RTKNCASIRT  300
GCKVMIRLLR TSDHGWYISR VSTSHNHKLS EGYAEKKQWN SHSMIDPSTK YFIKKLRDNN  360
VSIGRVCSII GVTDSSAMNP VRKETIRSLC AKVARENMAD DIGKTVQLLW EMKIKDPLME  420
VRFKVDEKGT VKSMLWCTGK NRMDYKNFGD VVTFDTTYRT NLYSLPFGIF IGVNCHFQSI  480
IFGGVLLSTE TAEDFQWAFQ NFMEMMDGSV PITVLTDQCA AMGKAIRTVL PGTRHRWCRW  540
HVLKSAKKKL GKVIARHKQF KSDFYNLITN ETCVDSFELS WKKLIIKYRL VKSKYMLRLY  600
KHREKWAKPY FMSVFCAGMT STQRSESANH MLKRYIQKAA PMHLFVSKFN EFLCDRTEQE  660
AREQHVTKMV TRRMRVGAPI EEHADLVYTR AMYEKFYDEL FEAGKFCVQR EDGNDRFIVS  720
SAKLSSDGVQ KKYVVTLHGE DFMSCQCGLY EHLGMLCRHA LKVLLHLDRQ EIPKFNIMRR  780
WTKEAVVYKA HGEQTDIASD ADQMRKKALM LQTLQIVHGP SPVDEQMFRN AMEALRPADQ  840
TQREDPPFDG QYQCSLHDDA GPVPLSCPPR TMKGGRPPST GLNAWISRKD KRRTLDSSPR  900
DPISEDWPEE EMPPSKKTRC LKDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG540200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432360.0AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.J10053.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-78FAR1-related sequence 5