PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG540200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 981aa    MW: 111360 Da    PI: 10.0674
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG540200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.2e-16307386190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +f+n Y+ e+GF +r  +s+k+ ++g +t+++ vCs+eg++++++ +         + rtgCk ++++ +++d+ w+++++++ HnH+l+
  Pavir.2NG540200.1.p 307 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 386
                          6********************9.7788*************9987665.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-13307386IPR004330FAR1 DNA binding domain
PfamPF105511.3E-28507600IPR018289MULE transposase domain
PROSITE profilePS5096610.002789824IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-4789823IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4799826IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MPQIPHRPLA ALRLAAPRRR APPHSERRRP QTAGPDGPRA SSASAGGRAA GLREGDVHRS  60
RRDQLRAPPT PCPSFRRPAR PEDQRHRSGA GRRRPPRIHA VPAPAGSRAV RRGSRGRQPL  120
HQLRLARETG APACQHHEQR ADRCRRPDEV LPNVLVSYGG RTHPHRRSGS QTGQAGRQLV  180
FTLAVLTEQV SPEQEGIMNI DLDLGVAEMI RDKFVGVDSG QIEGNGQEGG EAGAEEVELA  240
LEAGNVITER RIGWTRKSAR EGPSERIAVN EESAITRALS QAARNRGSPI FQHLEGTLFS  300
SSEEARDFFN LYSWEIGFGI RYGRSNKNNK GYTTRQDIVC SCEGSPRTKN CASIRTGCKV  360
MIRLLRTSDH GWYISRVSTS HNHKLSEGYA EKKQWNSHSM IDPSTKYFIK KLRDNNVSIG  420
RVCSIIGVTD SSAMNPVRKE TIRSLCAKVA RENMADDIGK TVQLLWEMKI KDPLMEVRFK  480
VDEKGTVKSM LWCTGKNRMD YKNFGDVVTF DTTYRTNLYS LPFGIFIGVN CHFQSIIFGG  540
VLLSTETAED FQWAFQNFME MMDGSVPITV LTDQCAAMGK AIRTVLPGTR HRWCRWHVLK  600
SAKKKLGKVI ARHKQFKSDF YNLITNETCV DSFELSWKKL IIKYRLVKSK YMLRLYKHRE  660
KWAKPYFMSV FCAGMTSTQR SESANHMLKR YIQKAAPMHL FVSKFNEFLC DRTEQEAREQ  720
HVTKMVTRRM RVGAPIEEHA DLVYTRAMYE KFYDELFEAG KFCVQREDGN DRFIVSSAKL  780
SSDGVQKKYV VTLHGEDFMS CQCGLYEHLG MLCRHALKVL LHLDRQEIPK FNIMRRWTKE  840
AVVYKAHGEQ TDIASDADQM RKKALMLQTL QIVHGPSPVD EQMFRNAMEA LRPADQTQRE  900
DPPFDGQYQC SLHDDAGPVP LSCPPRTMKG GRPPSTGLNA WISRKDKRRT LDSSPRDPIS  960
EDWPEEEMPP SKKTRCLKDI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG540200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432360.0AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1B6Q0S60.0A0A1B6Q0S6_SORBI; Uncharacterized protein
STRINGPavir.J10053.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-77FAR1-related sequence 5