PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG525400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 459aa    MW: 51984.4 Da    PI: 7.1354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG525400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.71.3e-128884572373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cAea+s++   +  +l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s e l+++k+++ ++P++
  Pavir.2NG525400.2.p  88 KQLLTKCAEALSEERIDEFLKLVQQARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SNELLSYMKILYSICPYF 174
                          689*****************************************************************9...99**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++++aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef+
  Pavir.2NG525400.2.p 175 KFGYMAANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFRIPLEFT 264
                          ***********************************************************999999************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          +l     + ++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+
  Pavir.2NG525400.2.p 265 PLPGVYATRVTKEMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFSETMDYYSAMFE 354
                          *98889999********************************************************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s++++lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp++ls+++++ ++ ll+ ++ d y++ee++g+++
  Pavir.2NG525400.2.p 355 SIDTNLPRDSKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYSLSSYVNSVIRKLLACYS-DKYTLEEKDGAML 443
                          ************************************************************************9999.55*********** PP

                 GRAS 360 lgWkdrpLvsvSaW 373
                          lgWk+r+L+s+SaW
  Pavir.2NG525400.2.p 444 LGWKNRKLISASAW 457
                          ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.72261439IPR005202Transcription factor GRAS
PfamPF035144.3E-12688457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQHALREIET VLMAPDADDA ANSTKHEFEE HKPTQLMRQR SRTWSESRQP SPGIVRTQFG  60
SGYPTASYDF RPEKRQRELR EDPQSMVKQL LTKCAEALSE ERIDEFLKLV QQARGVVSIT  120
GEPIQRLGAY LLEGLVARHG NSGTNIYRAL KCREPESNEL LSYMKILYSI CPYFKFGYMA  180
ANGAIAEALR NEDKIHIIDF QIAQGTQWIT LIQALAARPG GPPHVRITGI DDPVSEYARG  240
EGLDLVGKML KSMSEEFRIP LEFTPLPGVY ATRVTKEMLD IRPGEALAVN FTLQLHHTPD  300
ESVDVNNPRD GLLRMVKGLS PKVTTLVEQE SHTNTTPFLM RFSETMDYYS AMFESIDTNL  360
PRDSKERINV EQHCLAKDIV NIIACEGKDR VERHELLGKW KSRLTMAGFK PYSLSSYVNS  420
VIRKLLACYS DKYTLEEKDG AMLLGWKNRK LISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-70714573378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.64581e-173callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG525400.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278600.0KJ727860.1 Zea mays clone pUT5952 GRAS transcription factor (GRAS49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800435.10.0chitin-inducible gibberellin-responsive protein 1 isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2S3H3090.0A0A2S3H309_9POAL; Uncharacterized protein
STRINGPavir.J35699.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]