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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG499400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 884aa MW: 97174.5 Da PI: 7.7019 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.2 | 4.8e-22 | 76 | 178 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + + Pavir.2NG499400.1.p 76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqddaagarvvspsSTAPAPRCPDSRTGCLASLTIKLIPsANAF 164 6*****************99997666.****************999999999999998865666668899**************9999** PP FAR1 77 evtkleleHnHela 90 +vt+++ eHnH+la Pavir.2NG499400.1.p 165 RVTDFVAEHNHQLA 178 ************97 PP | |||||||
2 | FAR1 | 68.5 | 1.7e-21 | 226 | 325 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwev 78 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r a trtgC+a++++k + +++v Pavir.2NG499400.1.p 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivtangvagsSGTPRPGPAPTRTGCQARMVIKITPCRTYRV 313 9*************9976665..899****************9999*********99976677778899********************* PP FAR1 79 tkleleHnHela 90 +k+ +HnH+la Pavir.2NG499400.1.p 314 AKFFPDHNHPLA 325 **********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-19 | 76 | 178 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.4E-18 | 226 | 325 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.3E-23 | 414 | 508 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.101 | 682 | 729 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.3E-5 | 699 | 728 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-5 | 704 | 731 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASATNLA LTASTSAGGN DADADADVPT 60 SPHLGMYFET EEDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDDAAGARV VSPSSTAPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV AEHNHQLASA 180 APAVSLALLP PSSSHHSIAT AASLPDPRDG PHVDMHFETE EDAYVFYNRY AEHVGFSVRR 240 SYKKRKRGMI VSRIFVCSRE GVSDRAKQEG GAIVTANGVA GSSGTPRPGP APTRTGCQAR 300 MVIKITPCRT YRVAKFFPDH NHPLANPESV HKLRSHKMRA RAHELGAGDL HRRKQGKGVQ 360 LGDAGAALQY LEGLQLGNPS VYYAVGIGPD GKSAVNFFWA DAKSIIDFRS FGDVVCFDTT 420 YGLNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSFKW VFEVFADAMR ARQPQTILID 480 ERPECAAAAA EVWPGSNRCT SVWHIYHNSK RHLKQVFESS KSFSNALSHF LFDYEDEMEF 540 LSAWERLTEK HDISESEWLS GLFMEKEKWA LPYQRNIFSA DILTTLQKDN MINELKRELS 600 EQEDILQFFR RYEAILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG 660 EFETYMNCMS FPCGVVGTIS EYKIVLDEKP SENIVKFDAL DGSASCSCKK FEAVGIQCCH 720 VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGTG SVMQSASEAR FNNMCRLASL 780 IASRASKSEE AMSYIESQSS VLLKHLDNIL QTGYPDMGNH AVASSSQAIS FVGSQHPGHT 840 TQAGAVAQTT NAVQGCMIAG NPPHQQLVYS YELRGSASLC KLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17766 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG499400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804639.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025804640.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T7EWC7 | 0.0 | A0A2T7EWC7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00914.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-84 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG499400.1.p |