PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 884aa MW: 97174.5 Da PI: 7.7019

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG499400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.8e-22	76	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + + Pavir.2NG499400.1.p 76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqddaagarvvspsSTAPAPRCPDSRTGCLASLTIKLIPsANAF 164 6***************99997666.************999999999999998865666668899**********9999 PP FAR1 77 evtkleleHnHela 90 +vt+++ eHnH+la Pavir.2NG499400.1.p 165 RVTDFVAEHNHQLA 178 ************97 PP
2	FAR1	68.5	1.7e-21	226	325	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwev 78 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r a trtgC+a++++k + +++v Pavir.2NG499400.1.p 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivtangvagsSGTPRPGPAPTRTGCQARMVIKITPCRTYRV 313 9***********9976665..899************9999*****99976677778899***************** PP FAR1 79 tkleleHnHela 90 +k+ +HnH+la Pavir.2NG499400.1.p 314 AKFFPDHNHPLA 325 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-19	76	178	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.4E-18	226	325	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-23	414	508	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.101	682	729	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-5	699	728	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	704	731	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASATNLA LTASTSAGGN DADADADVPT 60 SPHLGMYFET EEDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK 120 PQDDAAGARV VSPSSTAPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV AEHNHQLASA 180 APAVSLALLP PSSSHHSIAT AASLPDPRDG PHVDMHFETE EDAYVFYNRY AEHVGFSVRR 240 SYKKRKRGMI VSRIFVCSRE GVSDRAKQEG GAIVTANGVA GSSGTPRPGP APTRTGCQAR 300 MVIKITPCRT YRVAKFFPDH NHPLANPESV HKLRSHKMRA RAHELGAGDL HRRKQGKGVQ 360 LGDAGAALQY LEGLQLGNPS VYYAVGIGPD GKSAVNFFWA DAKSIIDFRS FGDVVCFDTT 420 YGLNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSFKW VFEVFADAMR ARQPQTILID 480 ERPECAAAAA EVWPGSNRCT SVWHIYHNSK RHLKQVFESS KSFSNALSHF LFDYEDEMEF 540 LSAWERLTEK HDISESEWLS GLFMEKEKWA LPYQRNIFSA DILTTLQKDN MINELKRELS 600 EQEDILQFFR RYEAILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG 660 EFETYMNCMS FPCGVVGTIS EYKIVLDEKP SENIVKFDAL DGSASCSCKK FEAVGIQCCH 720 VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGTG SVMQSASEAR FNNMCRLASL 780 IASRASKSEE AMSYIESQSS VLLKHLDNIL QTGYPDMGNH AVASSSQAIS FVGSQHPGHT 840 TQAGAVAQTT NAVQGCMIAG NPPHQQLVYS YELRGSASLC KLN*

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASATNLA LTASTSAGGN DADADADVPT  60
SPHLGMYFET EEDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDDAAGARV VSPSSTAPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV AEHNHQLASA  180
APAVSLALLP PSSSHHSIAT AASLPDPRDG PHVDMHFETE EDAYVFYNRY AEHVGFSVRR  240
SYKKRKRGMI VSRIFVCSRE GVSDRAKQEG GAIVTANGVA GSSGTPRPGP APTRTGCQAR  300
MVIKITPCRT YRVAKFFPDH NHPLANPESV HKLRSHKMRA RAHELGAGDL HRRKQGKGVQ  360
LGDAGAALQY LEGLQLGNPS VYYAVGIGPD GKSAVNFFWA DAKSIIDFRS FGDVVCFDTT  420
YGLNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSFKW VFEVFADAMR ARQPQTILID  480
ERPECAAAAA EVWPGSNRCT SVWHIYHNSK RHLKQVFESS KSFSNALSHF LFDYEDEMEF  540
LSAWERLTEK HDISESEWLS GLFMEKEKWA LPYQRNIFSA DILTTLQKDN MINELKRELS  600
EQEDILQFFR RYEAILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG  660
EFETYMNCMS FPCGVVGTIS EYKIVLDEKP SENIVKFDAL DGSASCSCKK FEAVGIQCCH  720
VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGTG SVMQSASEAR FNNMCRLASL  780
IASRASKSEE AMSYIESQSS VLLKHLDNIL QTGYPDMGNH AVASSSQAIS FVGSQHPGHT  840
TQAGAVAQTT NAVQGCMIAG NPPHQQLVYS YELRGSASLC KLN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17766	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG499400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804639.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025804640.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7EWC7	0.0	A0A2T7EWC7_9POAL; Uncharacterized protein
STRING	Pavir.Ba00914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG499400.1.p