PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG499400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 884aa    MW: 97174.5 Da    PI: 7.7019
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG499400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.8e-2276178190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 
                          +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk              ++    + + +rtgC a+l++k+    + +
  Pavir.2NG499400.1.p  76 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqddaagarvvspsSTAPAPRCPDSRTGCLASLTIKLIPsANAF 164
                          6*****************99997666.****************999999999999998865666668899**************9999** PP

                 FAR1  77 evtkleleHnHela 90 
                          +vt+++ eHnH+la
  Pavir.2NG499400.1.p 165 RVTDFVAEHNHQLA 178
                          ************97 PP

2FAR168.51.7e-21226325290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwev 78 
                          fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg +++ k++             + + r   a trtgC+a++++k +   +++v
  Pavir.2NG499400.1.p 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRAKQEggaivtangvagsSGTPRPGPAPTRTGCQARMVIKITPCRTYRV 313
                          9*************9976665..899****************9999*********99976677778899********************* PP

                 FAR1  79 tkleleHnHela 90 
                          +k+  +HnH+la
  Pavir.2NG499400.1.p 314 AKFFPDHNHPLA 325
                          **********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1976178IPR004330FAR1 DNA binding domain
PfamPF031011.4E-18226325IPR004330FAR1 DNA binding domain
PfamPF105518.3E-23414508IPR018289MULE transposase domain
PROSITE profilePS5096610.101682729IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-5699728IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5704731IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MSAAGDPSRL SGESSPSSPT SSGSSSPSSS AADASATNLA LTASTSAGGN DADADADVPT  60
SPHLGMYFET EEDAYEFYKA YAARLGFVVR KSNKSKNSRH TVTRRLFVCS KQGFRQEPKK  120
PQDDAAGARV VSPSSTAPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV AEHNHQLASA  180
APAVSLALLP PSSSHHSIAT AASLPDPRDG PHVDMHFETE EDAYVFYNRY AEHVGFSVRR  240
SYKKRKRGMI VSRIFVCSRE GVSDRAKQEG GAIVTANGVA GSSGTPRPGP APTRTGCQAR  300
MVIKITPCRT YRVAKFFPDH NHPLANPESV HKLRSHKMRA RAHELGAGDL HRRKQGKGVQ  360
LGDAGAALQY LEGLQLGNPS VYYAVGIGPD GKSAVNFFWA DAKSIIDFRS FGDVVCFDTT  420
YGLNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSFKW VFEVFADAMR ARQPQTILID  480
ERPECAAAAA EVWPGSNRCT SVWHIYHNSK RHLKQVFESS KSFSNALSHF LFDYEDEMEF  540
LSAWERLTEK HDISESEWLS GLFMEKEKWA LPYQRNIFSA DILTTLQKDN MINELKRELS  600
EQEDILQFFR RYEAILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG  660
EFETYMNCMS FPCGVVGTIS EYKIVLDEKP SENIVKFDAL DGSASCSCKK FEAVGIQCCH  720
VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGTG SVMQSASEAR FNNMCRLASL  780
IASRASKSEE AMSYIESQSS VLLKHLDNIL QTGYPDMGNH AVASSSQAIS FVGSQHPGHT  840
TQAGAVAQTT NAVQGCMIAG NPPHQQLVYS YELRGSASLC KLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.177660.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG499400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804639.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025804640.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7EWC70.0A0A2T7EWC7_9POAL; Uncharacterized protein
STRINGPavir.Ba00914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-84FAR1-related sequence 5