PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG499200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 811aa    MW: 92084.5 Da    PI: 5.8538
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG499200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18e-2057143190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fY +Y+ ++GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++   +tgCkak+ vk  + +++wev+ leleHnH+l
  Pavir.2NG499200.2.p  57 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGMKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPL 142
                          6****************99988..9999**************99877..7777778899*************9****************9 PP

                 FAR1  90 a 90 
                           
  Pavir.2NG499200.2.p 143 D 143
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1757144IPR004330FAR1 DNA binding domain
PfamPF105514.4E-20265355IPR018289MULE transposase domain
PfamPF044341.9E-5544576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.161544580IPR007527Zinc finger, SWIM-type
SMARTSM005750.0052555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MEEEDYSTES SNEEDAQEDG EKEGNAAENE VFKPVDIDPA CLPKVGMIFD SEEDAFQFYV  60
TYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGM KTGCKAKMIV  120
KDAHFQNRWE VIVLELEHNH PLDPSLLKFN RHLKNSPFSL NPPRMSESEG PQSSSAVALS  180
SRGGDTAVTS SALIEFKTKI DRNRKLKLAE GDLEALLGFL NKMQDQNPCF FYSLDMNEQG  240
QLRNVFWADA KSRSSYNYFG DVVAINVTNF SDQYDMQFVS FVGTNHHAQP VLLGCGLLAG  300
RSLGAYVWLF GTWLRCMNAR PPHSIITNYC HDVAIAIKKV FPNARHRFCL SHILNELPEK  360
LEEMESKDEV ISAFITLAYD YVTMPDFDKE WQDTIQHFRL EGNEWLSKLY EVRMQWAPVY  420
VKDSFWAGLS VMDRSDSVTD YFDGWLASGT SLKMFVEQYE EAVKDKLEKE SYEDLRSSQM  480
RPPMMTGLPV EDQAAKVYTA EIFQKFLNEI GHSFNCNYSI LDRNDSVVTY IVSEHINQTT  540
KVDYKVVYDN VEDDIWCLCQ LFQSKGILCR HSLTVLRQEL VLIIPPKYII HRWCKDCKQT  600
CASISQPVSA SNQELGSYDD LYKLGHQYFA EVVEFGSMNS ESKEYALSIM RGIRDKVISY  660
EKSLRDQRVD SHVSTANFAY NPVNEDFTDD ALPISLSTKG WDLTQGQSKR SRKKKLATPT  720
VLDTLKKKTK RAYNKRRNAT ANTVNTVVSA TDSVTDATNA NPVNEGWPLT SAGAPETFSY  780
GVETISFDLS QYSNAPSFHW PESSSRSQIQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.270090.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG499200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957762.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2T7EWE00.0A0A2T7EWE0_9POAL; Uncharacterized protein
STRINGPavir.Ba00916.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-108FAR1-related sequence 6