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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.2NG479800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 241aa MW: 25934.5 Da PI: 6.9169 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG479800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 26.7 | 9.7e-09 | 158 | 198 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ +L++l+P +K++ a++L +A++Y+k L
Pavir.2NG479800.1.p 158 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
699*****************87.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MEFDLLNYSP EAQLELMNTM LQLEQLTKLD GGHESLMAPV SPPVSPVQTH AAHCFSPPPH 60
VSATAAATGY YPDQGTPPAA YAGSIGLEHL QVDYVLSPCA DTAARPAGSP SPTSSADAMR 120
EVIFHIAALQ PVEIEPEAVR PPKRRNVRIS KDPQSVAARL RRERISERIR TLQRLVPGGT 180
KMDTASMLDE AIHYVKFLKS QVQSLERAAA AATHRAAALG AAFHPALHAP WQYAVPHGDM 240
*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 144 | RPPKRR |
| 2 | 158 | 163 | RLRRER |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. |
| Uniprot | TISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU956156 | 1e-176 | EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds. |
