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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG476100.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRF |
| Protein Properties |
Length: 262aa MW: 27080.2 Da PI: 5.0801 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG476100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 72.7 | 4.3e-23 | 172 | 216 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e
Pavir.2NG476100.1.p 172 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 216
69************************************9998875 PP
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| 2 | QLQ | 54.3 | 4e-19 | 106 | 141 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k
Pavir.2NG476100.1.p 106 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 141
8*********************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MAAEGEAKNP SGGGGGGGGG GGVDNPQVEV APSAAAPAEG EAVVAAAQGT GQGPEGEKAD 60
REGEKDDGAC RDLVLVEDPE EAAATAALQE EMKALVASIP GGAGAAFTAM QLQELEQQSR 120
VYQYMAARVP VPTHLVFPIW KSVTGASSEG AQKYPTLMGL ATLCLDFGKN PEPEPGRCRR 180
TDGKKWRCWR STIPNEKYCE RHMHRGRKRP VQLVVEDDEP DSASGSKTTA GKATEGAKKA 240
DDKSPSNKKL AVAAPAAVQS I*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042513 | 0.0 | BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds. |
| GenBank | BT087437 | 0.0 | BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds. |
| GenBank | EF515849 | 0.0 | EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds. |
| GenBank | EU960601 | 0.0 | EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds. |
| GenBank | KJ726874 | 0.0 | KJ726874.1 Zea mays clone pUT3415 GRF transcription factor (GRF3) mRNA, partial cds. |
| Publications
? help Back to Top |
- Soderlund C, et al.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS Genet., 2009. 5(11): p. e1000740
[PMID:19936069] - Schnable PS, et al.
The B73 maize genome: complexity, diversity, and dynamics.
Science, 2009. 326(5956): p. 1112-5
[PMID:19965430] - Zhang D, et al.
GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
Plant Cell, 2018. 30(2): p. 360-374
[PMID:29437990]
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