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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG475600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
FAR1 |
Protein Properties |
Length: 541aa MW: 62340 Da PI: 8.4903 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG475600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 27.3 | 1.2e-08 | 127 | 167 | 50 | 90 |
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+++++a++rt C+a+++ + ++++ w v+k++ +HnH la
Pavir.2NG475600.1.p 127 MTSKENATKRTCCDARIQFSVSREEIWTVQKIVFDHNHYLA 167
56899*********************************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 541 aa
Download sequence Send
to blast |
MVEPDTLQSA AAAEIAVQSV SPLRASSAPG NELVTGASTV SEVMEMLTNS TMQAPEVFEA 60 IAPQDPPTDQ VGSNHGGSAI VPHVGMSFKS ENDAYQIYNA YARRISFSIR KSTTRLKPDG 120 TVYQKHMTSK ENATKRTCCD ARIQFSVSRE EIWTVQKIVF DHNHYLASPN KVNKLRSQRR 180 IKEADKQLIS QIREAGIQPA KVYEFFKQWY GGVENVPFTL MDCNNMIGRE RRNQFFWADG 240 QAIMDYACFG DAVSFDTTFQ TNKFEMPFAP LLGTNHHKQT IIFGAALLYN ETIESFVWLF 300 NTFLTAMSEF KRCVYQESSV AYFDELWHEL LNKYKLEKNS WLSSLYALRA HWAAIFRMNN 360 VFKKRFRRKL CLYELIEECE KCTASLRENE LDADYKSRST NPIIYMPHLA MLKTAAQSYT 420 RNLYSDFEEQ FKEQFSFSCK LFQSEGATNT YKVTPTKYQD EAIIIFNSED LTIKCSCRKY 480 ECIGILCKHA IRVLTINEVF ILPTQYILNR WTKYAKRGFY CEKRKLNDNE TSKAHFKRSS 540 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012619 | 7e-73 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |