PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG467900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 375aa    MW: 40628.9 Da    PI: 7.1029
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG467900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-1085127345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k++rr+++NReAAr+sR RKka+i eLe   ++L +  ++L
  Pavir.2NG467900.2.p  85 DQKVQRRLAQNREAARKSRMRKKAYIVELESSRAKLAQLEQEL 127
                          679***************************9888887766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-783162IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.51985129IPR004827Basic-leucine zipper domain
PfamPF001703.2E-786127IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.7E-987131No hitNo description
SuperFamilySSF579592.19E-787130No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
PfamPF141445.9E-28170245IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAPPGMASAA DDGRFCLPWA AAHFENWGDS GGIVVTSPLT ETTCTDADDA SGDRQPAQMG  60
GGAITQSVAA YMDSCAASKE GSCRDQKVQR RLAQNREAAR KSRMRKKAYI VELESSRAKL  120
AQLEQELQRA RQQGMFIASG RTGDHGGSTG GASAAFDLEY ARWLDEHQRH MTDLRVALGA  180
QLGDDDLRVL VDGAMLHYEQ LFRLKGAATR ADVFHVLSGM WVSPAERFFM WLGGFRSSEL  240
LAVLARQVEP LTEQQLVGLC SLRQSSQQAE DALSQGIEAL QQALADTLAA AGASAAGAAA  300
DGVTNYMGQM AVAMGKLATV ENFLRQADLL RQQTLQQMRR ILTTRQAARA LLVVSDYFSR  360
LRALSSLWLT RPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG467900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBankKJ7275600.0KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812128.10.0transcription factor TGAL3-like
SwissprotQ5Z6N91e-171TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A2T7E1F90.0A0A2T7E1F9_9POAL; Uncharacterized protein
STRINGPavir.J20659.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.13e-90bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]