PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG464900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 319aa    MW: 34486.4 Da    PI: 9.892
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG464900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.17.7e-2620111184
             trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                          rWt+qe+l+Lie++r +e++ r rg+          ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++   
  Pavir.2NG464900.1.p  20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggagagAEPTKWAAVADYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGLAARKE--- 106
                          8****************9999853324566777777********************************************9854443... PP

             trihelix  80 pyfdq 84 
                          + f  
  Pavir.2NG464900.1.p 107 ASFWA 111
                          34444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-1120102No hitNo description
Gene3DG3DSA:1.10.10.601.9E-52087IPR009057Homeodomain-like
PROSITE profilePS500906.4112088IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSNAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GAGAGAEPTK  60
WAAVADYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG LAARKEASFW AMRNDARRER  120
RLPGFFDREV YDILEGRAVG NAAAARPVVV DVESKAEVAA ALDGGRGAGL FSSSEDEDDQ  180
EDDAATPSPT PTATPAPAPA PAALPASEKT TDVPRQESSE QAGTSKRKQP EQIAEDSPAQ  240
CGQKRQRSDD TTSGRTAMNL QGQLVEILDR SSQMVAAQLE AQNINSRLDR EQRKDQVSSL  300
LGVLGKVADA LYRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RGRGRGRARG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.338761e-142callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG464900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-154EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826048.10.0trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A2T8IC050.0A0A2T8IC05_9POAL; Uncharacterized protein
STRINGPavir.J11716.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-50Trihelix family protein