 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.2NG452600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 347aa MW: 38143.7 Da PI: 10.477 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG452600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 119 | 166 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl
Pavir.2NG452600.1.p 119 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 166
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 59.5 | 7.3e-19 | 172 | 216 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
Pavir.2NG452600.1.p 172 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 216
89********************.*********.************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0010224 | Biological Process | response to UV-B |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation |
| GO:1903086 | Biological Process | negative regulation of sinapate ester biosynthetic process |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MRSWRPGPGK REAYRPNLFP PNSASPLEDL SSPRSSQVPI KSRPPSTHPW RSQAPQQKAA 60
ATSTAAARPP HRGKGREGKK AAAKRILGKA ASNIAGRSGL GSSAAMGRSP CCEKAHTNKG 120
AWTKEEDDRL VAYIKAHGEG CWRSLPKAAG LLRCGKSCRL RWINYLRPDL KRGNFTEEED 180
ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIRRK LLSRGIDPVT HRPINEHASN 240
ITISFEAARE EKGAVFRLEE PKAAAIGRDQ NPGDWGHGKP LKCPDLNLDL CISPPCQEEP 300
LKPVKREAGL CFSCSLGLPK SAECKCSSFL GGLRTAMLDF RSLEMK*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HF679410 | 0.0 | HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein. |
