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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.2NG449200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 270aa MW: 29401.9 Da PI: 5.1787 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG449200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd +l+ + G +W+++++ g+ R++k+c++rw +yl
Pavir.2NG449200.1.p 14 RGPWTAEEDRKLISFILSNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
89******************************99************97 PP
|
| 2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
T E++ +d++++lG++ W++Ia++++ gRt++++k++w+++
Pavir.2NG449200.1.p 70 LTDAEEQAVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
5899***************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKRGPWTAE EDRKLISFIL SNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60
LRPDLKRGLL TDAEEQAVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG 120
IDPVTHETLD PKTSSPATTQ SVVTADSTKS DEATKQQSPQ SDAMRDVLAD GSSPTESSAN 180
TVSTGGSISS SHDQDPLVKW LLEEDPPTGD EPWLNFTGSV DVDELSSIAA GPELPWDGAT 240
DWLLDYQDFG LGDSSLVDGY MINSSNGAN*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT041771 | 0.0 | BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds. |
| GenBank | BT062437 | 0.0 | BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds. |
| GenBank | HQ858697 | 0.0 | HQ858697.1 Zea mays clone UT1153 MYB transcription factor mRNA, partial cds. |
