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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG444500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 237aa MW: 25208.2 Da PI: 5.3291 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG444500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56.5 | 6.9e-18 | 57 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+ ++GVr++ + grWv+e+r+p g + r +lg+f+tae Aa+a++aa++++ g
Pavir.2NG444500.1.p 57 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIAG 109
579******************9...6445**********************98765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MCPTIKKEMS AESSPPCCSW ASTSTSSPEQ AHHQQTVWTS PPKKPAGRTK FRETRHPVFR 60 GVRRRGNAGR WVCEVRVPGR RGCRLWLGTF DTAEAAARAH DAAMLAIAGA GACLNFADSA 120 WLLAVPASYA SLAEVRHAVA EAVKGFQRRE ALSVSEDDAA SSSAPSSPAS VELDGPSTDG 180 EESPSPAFEL DVFNDMSWDL YYASMAQAML MEPPSAVQAF GDDGLAGAGD VPLWSY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT203483 | 1e-136 | KT203483.1 Paspalum vaginatum clone Sp26 hypothetical protein mRNA, partial cds. |