PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG440900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 282aa    MW: 29965.6 Da    PI: 5.6079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG440900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12117162454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Pavir.2NG440900.1.p 117 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 162
                          89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-15115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-12116167No hitNo description
PfamPF000101.4E-9116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDLLSPCSS FSPPSPPSFF SHAGHPIIEF TSCEVPEQWL LGDVVVAKNE AGYDDGDDLW  60
SSLSPDSDLS VQPPPPSQPA PPPQQEQEPS ATVPAAQPPG KRRGRKPGPR PEGPTVSHVE  120
AERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAAAYIA ELRARVARLE AESRRAAAAR  180
WEPVAASCGP PRAPGHGGEA VEVRMLGPDA ASVRATSAAP HAAARLMGAL RSLELHVQHA  240
CVTRVHGLTV QDVVVDVPAQ LQDDDGLRAA LVQVLQEQDS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-18116172763Transcription factor MYC2
5gnj_B1e-18116172763Transcription factor MYC2
5gnj_E1e-18116172763Transcription factor MYC2
5gnj_F1e-18116172763Transcription factor MYC2
5gnj_G1e-18116172763Transcription factor MYC2
5gnj_I1e-18116172763Transcription factor MYC2
5gnj_M1e-18116172763Transcription factor MYC2
5gnj_N1e-18116172763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG440900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804315.11e-138transcription factor MYC2-like
TrEMBLA0A2T7EUS41e-140A0A2T7EUS4_9POAL; Uncharacterized protein
TrEMBLA0A3L6QNX71e-140A0A3L6QNX7_PANMI; Transcription factor MYC2-like
STRINGPavir.Ba01305.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-16bHLH family protein