PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG439800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 254aa    MW: 26720.3 Da    PI: 8.4902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG439800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1269115354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e Er+RR+++N +f eLr  +P+       +++Ka+ L  A +YI +L
  Pavir.2NG439800.1.p  69 ASHVESERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAARYIAEL 115
                          5899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1669132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1069115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1570128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-1370120No hitNo description
SMARTSM003535.9E-1172121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAAGENENDD VGAYYLVETP TPTPAAAGGV LSPADSELSK LILPSPSAPA APRRGRKPGP  60
RAAAGAAAAS HVESERQRRE KLNRRFCELR AAVPTVSRMD KASLLADAAR YIAELRARVA  120
QLEADADARH HAALARWEPA SAGGDDAGAA VGGELYVRKV GRDAAVVRVT SGARHAPAWL  180
MGALRSLELQ VQHACVSRVH GVTTQDVLVN LPDGAAALQD HDGLRGALLQ KDSMFLFVLS  240
RVLAFFYFCV SIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1770125863Transcription factor MYC2
5gnj_B2e-1770125863Transcription factor MYC2
5gnj_E2e-1770125863Transcription factor MYC2
5gnj_F2e-1770125863Transcription factor MYC2
5gnj_G2e-1770125863Transcription factor MYC2
5gnj_I2e-1770125863Transcription factor MYC2
5gnj_M2e-1770125863Transcription factor MYC2
5gnj_N2e-1770125863Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG439800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270126e-50KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.11e-109transcription factor MYC2-like
TrEMBLA0A3L6T7221e-111A0A3L6T722_PANMI; Uncharacterized protein
STRINGPavir.Ba01307.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-23bHLH family protein