 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.2NG419300.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
SBP |
| Protein Properties |
Length: 436aa MW: 45661 Da PI: 7.5181 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG419300.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 129.3 | 1.4e-40 | 111 | 187 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
Pavir.2NG419300.2.p 111 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLVEFDDAKRSCRKRLDGHNRRRRKPQT 187
**************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MDWDLKMPVS WDLADLEHDA VPAIATAAAA PRAAASSGIA AAAAASARGA PSRAECSVDL 60
KLGGLGEFGA ADRMKEPVSA GAAAAAVPSA SPMKRPRSGA SGGGGAQCPS CAVDGCKADL 120
SKCRDYHRRH KVCEAHSKTP VVVVAGREMR FCQQCSRFHL LVEFDDAKRS CRKRLDGHNR 180
RRRKPQTDTM NSGTFMTSQQ GTRFSSFPAP RPEPSWSGVI KSEDSSYYTH HQVLSTRPHF 240
AGSTPAYSNS KEGRRFPFLQ DGDQVSFSAG AAAALEVSAV CQPLLKTVAP PPESSSSNKI 300
FSDGLTPVLD SDCALSLLSS PANSSSVDVS RMVQPTEHIP MAQPLVPSLH PQQQQQHQFG 360
SPPGWFACSQ AGSSGVASAA GAGGFACPPS VESEQLNTVL VPGSDGHEMN YHGIFHVGGE 420
GSSDGTSPSL PFSWQ*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 167 | 184 | KRSCRKRLDGHNRRRRKP |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
