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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG403800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 345aa MW: 36607.2 Da PI: 7.585 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG403800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.3 | 3.1e-14 | 122 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P a ++++ + a+i+ A++++k+L+
Pavir.2NG403800.1.p 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPAA---NAQRGDQASIVGGAINFVKELE 173
79****************************...*******************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MALEAVVLSQ SQQQGSSRRF GCGAMAGGPW SGLFWGAEGA AELSGAGAGT WDAAACSSSM 60 LLREFQEPAG SIAAAAVPPV ESGASVGQEE ATAVAPAPPA PVARRKRRRT RAVKNKEAAE 120 SQRMTHIAVE RNRRKQMNEY LAVLRSLMPA ANAQRGDQAS IVGGAINFVK ELEQLLQSLE 180 ARRRQRSAQH PVTGVGGDVA APFAGFFTFP QYSMRTAAAA PEHAPADATT HRDGAAEAED 240 ASGSKPSAVA DVEATMVESY ANLRVLSRRR PRQLLRLVVG LQGHRLTVLH LNMSSAGQMV 300 LYSFSLKVED DCQLTSVDEI AAATYQIVEK IDQEQGCSLE QHQA*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 104 | 108 | RKRRR |
2 | 104 | 109 | RKRRRT |
3 | 122 | 133 | RMTHIAVERNRR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT056041 | 1e-110 | BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds. |
GenBank | EU951970 | 1e-110 | EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds. |
GenBank | KJ728035 | 1e-110 | KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds. |