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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG375200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 459aa MW: 51099.7 Da PI: 7.4994 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG375200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.3 | 2.5e-11 | 149 | 192 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e
Pavir.2NG375200.2.p 149 ERDTKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 192
78999**************************9633355555555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MYLSVAHTSR SGKEASGAYD HLGELDQALF MYLDHGSGHG ATHQEQRQTL NIFPSQPMHV 60 EPSPKGEISL VLSPAPVGSK QPRSPDHHHH QQAAMEELAG SRRLQQEHHH LQHQPFPAAG 120 AEPAAGGMTK DVKPLANKKD HRRGTSTSER DTKTLRRLAQ NREAARKSRL RKKAYIQQLE 180 SSRIRLAQLE QELHTARAQG VFFPNSSLLA DQGVAGKGVP IGGIDGLSSE AAMFDVEYGR 240 WQEEHYRLMY ELRAALQQHL PEGELQMYVE SCLAHHDEMM GIKEGAIKGD VFHLISGVWR 300 SPAERCFLWL GGFRPSEVIK MLLSHVEPLT EQQIVGVYGL QQSALETEEA LSQGLDALYQ 360 SLSDTVVSDA LSCPSNVANY MGQMAAAINK LSTLEGFVRQ AESLRQQTLH RLHQILTTRQ 420 MARSLLAVSD YFHRLRTLSS LWVTRPRAPQ EQPQQGHS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |