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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG375200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 502aa MW: 55653.5 Da PI: 7.3453 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG375200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.1 | 2.8e-11 | 192 | 235 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e
Pavir.2NG375200.1.p 192 ERDTKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 235
78999**************************9633355555555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 502 aa
Download sequence Send
to blast |
MASGGSLREH QQQQEMNISF GMVNNHHGGH HHHHQPPSSS SSSSMHAAAA SFMSGKEASG 60 AYDHLGELDQ ALFMYLDHGS GHGATHQEQR QTLNIFPSQP MHVEPSPKGE ISLVLSPAPV 120 GSKQPRSPDH HHHQQAAMEE LAGSRRLQQE HHHLQHQPFP AAGAEPAAGG MTKDVKPLAN 180 KKDHRRGTST SERDTKTLRR LAQNREAARK SRLRKKAYIQ QLESSRIRLA QLEQELHTAR 240 AQGVFFPNSS LLADQGVAGK GVPIGGIDGL SSEAAMFDVE YGRWQEEHYR LMYELRAALQ 300 QHLPEGELQM YVESCLAHHD EMMGIKEGAI KGDVFHLISG VWRSPAERCF LWLGGFRPSE 360 VIKMLLSHVE PLTEQQIVGV YGLQQSALET EEALSQGLDA LYQSLSDTVV SDALSCPSNV 420 ANYMGQMAAA INKLSTLEGF VRQAESLRQQ TLHRLHQILT TRQMARSLLA VSDYFHRLRT 480 LSSLWVTRPR APQEQPQQGH S*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |