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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG362800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ZF-HD |
Protein Properties |
Length: 276aa MW: 28818.3 Da PI: 7.6969 |
Description |
ZF-HD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG362800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | ZF-HD_dimer | 97.2 | 1.3e-30 | 60 | 110 | 5 | 56 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC CHRnFHR+
Pavir.2NG362800.1.p 60 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACSCHRNFHRKG 110
8*************************9.999*******************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0003677 | Molecular Function | DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MDFDDQDDGD EEMAPMPVSS SYETPPLAAG FGGGAAQPKP PGEPVPLAKA PGGHGGGGGR 60 YRECLKNHAV GIGGHAVDGC GEFMAAGEEG TLDALRCAAC SCHRNFHRKG SPTSEGSPAA 120 LVAYGAAPHH QFPPYYRTPA GYFPHHQPLH MAAAAGHAPR PLALPSTSHS GRDDGDDLSG 180 MPGPMSAMLP LGGMSLGGAG PSVSGGSGSA GKKRFRTKFT QEQKDRMLAF AERVGWRLQK 240 HDEAAVQQFC DEVGVKRHVL KVWMHNNKHT LGKKP*
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012617 | 1e-102 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |