PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG347000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 547aa    MW: 57953 Da    PI: 10.0231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG347000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06112134123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++Cg+ F r  nL+ H r+H
  Pavir.2NG347000.1.p 112 YVCEICGQGFQRDQNLQMHRRRH 134
                          9*********************9 PP
2zf-C2H211.50.00095191212223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C  C+k +  +s++k H++t+
  Pavir.2NG347000.1.p 191 ACARCSKAYAVHSDYKAHLKTC 212
                          6*******************98 PP
3zf-C2H210.60.0018220238523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr +++  H+ t+
  Pavir.2NG347000.1.p 220 DCGRVFSRVESFIEHQDTC 238
                          9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.84E-5111134No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5111134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635112134IPR007087Zinc finger, C2H2
SMARTSM003550.0032112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355110154184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.84E-5185210No hitNo description
SMARTSM00355230190217IPR015880Zinc finger, C2H2-like
SuperFamilySSF569541.7E-5368461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQTPVAYYTY QLSPFIPYTV TPQRKLLRPK ASLESCLPPP LSLSLSLSLF LGVVSVAAPQ  60
KPTPRPLLPT TIATTAAAAA TTKKKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICGQG  120
FQRDQNLQMH RRRHKVPWKL LKREAGEAAR KRVFVCPEPS CLHHDPSHAL GDLVGIKKHF  180
RRKHSGHRQW ACARCSKAYA VHSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDTCTA  240
GRARAGASPA CGGGGGGVGV AAASAGSRQQ APPPALSLSR TASSTSPSSD VVISPAAWPG  300
PPLPSPTAAA FHGRFDRVPS PRTPPSEHHC GGRTHNLELQ LMPPSCSVAG GGGAPGMAAF  360
RGAQSSPAVS SRGDAAAAIQ LQLSIGVFGG GPGDAGERGG EALVAAARAR QEVEARELLR  420
QAVAEKAAAD EARAQARRHA ELAEQELASA KRMRRQAQVE LSRAHALREH AVRQVNATLL  480
QITCLGCRHK FRARPAPPPD VACSYVSSVV TEGGDAEVDE PPPLDADGGG MRRRQHAMAM  540
AMDIVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17186240357Zinc finger protein JACKDAW
5b3h_F1e-17186240357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286KKKRR
28287KKKRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.281861e-62root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG347000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803598.10.0protein indeterminate-domain 16-like
TrEMBLA0A3L6QUU40.0A0A3L6QUU4_PANMI; Protein indeterminate-domain 16-like
STRINGPavir.Ba02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-95indeterminate(ID)-domain 14