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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG344500.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
HD-ZIP |
Protein Properties |
Length: 347aa MW: 36206.4 Da PI: 7.8314 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG344500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 170 | 224 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k
Pavir.2NG344500.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 224
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 170 | 260 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +
Pavir.2NG344500.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-A 258
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 lk 92
lk
Pavir.2NG344500.1.p 259 LK 260
55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MELGLSLGET MADAGRDLVL GLGMGAGARR DGEAEPGRRE LEFGARRCGR RPSPEPAVRL 60 TLLPGLVPGL GLPWPPPSEA TRHLEASTRG FDVNRAPSLS AAGAAAEDDE ERDDAGAAGA 120 AAASSSPNNS AGSFPTDFSA HGQTGPGPSG GGGDRAGSRA SDEDDGGSAR KKLRLSKEQS 180 AFLEESFKEH ATLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE 240 TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASTSAPA AAAPAQAASS 300 SPSPAGGGGI AAAPPEQRPS SFAALFSSPL SRPLAAQPQP QAPASS*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 218 | 226 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036447 | 0.0 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. |
GenBank | KJ726911 | 0.0 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |