PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG334200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 36851.7 Da PI: 8.4876 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.4e-30 | 178 | 236 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnhe Pavir.2NG334200.1.p 178 KDGYQWRKYGQKVTRDNPYPRAYFRCAYApSCPVKKKVQRSAEDKSMLVATYEGEHNHE 236 8***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 26.67 | 172 | 238 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-29 | 172 | 237 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-25 | 173 | 237 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-36 | 177 | 237 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 178 | 236 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MLTAEGPGWL SVKSLPEPGG PRRSPAHPSL HSMARRVLAQ ASRFLPFRDH PPLLLRIFRR 60 TPCHVAMDGD GECSSPTGRA PGLLPLFGPS PAAESPEDKL RRVSEENRRL SGALDAILAD 120 HPHLRALAAP PTPSCHVHGN AAPAEVAGGG GVTAEPRSKV RTVCARAEPS DADANHLKDG 180 YQWRKYGQKV TRDNPYPRAY FRCAYAPSCP VKKKVQRSAE DKSMLVATYE GEHNHEQRAQ 240 SEYVSDAPTI QLLQQQQQAG SLPCSISINS SGRTITLGLA DQRPGSNAEA AAAAEVMTPE 300 FRKVLVDELV NLLKNDPEFM ESLTSAVAAR VMERIPGQIF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-20 | 170 | 236 | 10 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 5e-20 | 170 | 236 | 10 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG334200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}. | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956089 | 2e-97 | EU956089.1 Zea mays clone 1557298 WRKY62 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. | |||
GenBank | KJ728199 | 2e-97 | KJ728199.1 Zea mays clone pUT6474 WRKY transcription factor (WRKY104) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803038.1 | 1e-164 | WRKY transcription factor WRKY62-like isoform X2 | ||||
Swissprot | B8BF91 | 8e-81 | WRK62_ORYSI; WRKY transcription factor WRKY62 | ||||
Swissprot | Q6EPZ0 | 8e-81 | WRK62_ORYSJ; WRKY transcription factor WRKY62 | ||||
TrEMBL | A0A2S3GZJ1 | 1e-163 | A0A2S3GZJ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01850.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12921 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-37 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG334200.1.p |