PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG334200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 341aa    MW: 36851.7 Da    PI: 8.4876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG334200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30178236259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnhe
  Pavir.2NG334200.1.p 178 KDGYQWRKYGQKVTRDNPYPRAYFRCAYApSCPVKKKVQRSAEDKSMLVATYEGEHNHE 236
                          8***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.67172238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-29172237IPR003657WRKY domain
SuperFamilySSF1182901.18E-25173237IPR003657WRKY domain
SMARTSM007748.4E-36177237IPR003657WRKY domain
PfamPF031064.8E-25178236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLTAEGPGWL SVKSLPEPGG PRRSPAHPSL HSMARRVLAQ ASRFLPFRDH PPLLLRIFRR  60
TPCHVAMDGD GECSSPTGRA PGLLPLFGPS PAAESPEDKL RRVSEENRRL SGALDAILAD  120
HPHLRALAAP PTPSCHVHGN AAPAEVAGGG GVTAEPRSKV RTVCARAEPS DADANHLKDG  180
YQWRKYGQKV TRDNPYPRAY FRCAYAPSCP VKKKVQRSAE DKSMLVATYE GEHNHEQRAQ  240
SEYVSDAPTI QLLQQQQQAG SLPCSISINS SGRTITLGLA DQRPGSNAEA AAAAEVMTPE  300
FRKVLVDELV NLLKNDPEFM ESLTSAVAAR VMERIPGQIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-201702361075Probable WRKY transcription factor 4
2lex_A5e-201702361075Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}.
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG334200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}.
UniProtINDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560892e-97EU956089.1 Zea mays clone 1557298 WRKY62 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7281992e-97KJ728199.1 Zea mays clone pUT6474 WRKY transcription factor (WRKY104) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803038.11e-164WRKY transcription factor WRKY62-like isoform X2
SwissprotB8BF918e-81WRK62_ORYSI; WRKY transcription factor WRKY62
SwissprotQ6EPZ08e-81WRK62_ORYSJ; WRKY transcription factor WRKY62
TrEMBLA0A2S3GZJ11e-163A0A2S3GZJ1_9POAL; Uncharacterized protein
STRINGPavir.Ba01850.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129212834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.22e-37WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Chen X, et al.
    A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity.
    J. Biol. Chem., 2010. 285(14): p. 10454-63
    [PMID:20118235]
  5. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  6. Park CJ,Ronald PC
    Cleavage and nuclear localization of the rice XA21 immune receptor.
    Nat Commun, 2012. 3: p. 920
    [PMID:22735448]
  7. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  8. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  9. Hou Y, et al.
    JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.
    BMC Plant Biol., 2015. 15: p. 286
    [PMID:26646110]
  10. Liu J, et al.
    Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense.
    Plant Physiol., 2016. 171(2): p. 1427-42
    [PMID:27208272]