 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2NG323700.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 452aa MW: 45761.4 Da PI: 7.2181 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG323700.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 101.8 | 4.4e-32 | 257 | 310 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
Pavir.2NG323700.2.p 257 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 310
9****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MEASSAASPD LSLHISLPSS APRSGPSGGR ATVGGAGGGG GAGGDPWRRL NGSTASTELS 60
LSPPAEQEHA DALPWRHSPS SAAGAPSAAT TSAGAALMPT MPMLQPLEGG GGGGGASAAA 120
PIRGIPIYNG PGGFPFLPPA AGGDGGHHQK LGFYGSYHPA TWPSSLGSTS PSPGAPPAPL 180
DPASAFLSPA AHHHHRMLSA SGRLNGMLSE TLLGYGGGGL GGIGGHHHHH HLHGAQPFGL 240
GSRFMPKLPA KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH 300
VKSHLQMYRT VKSTDKPAAS SGPNDGGSGD EDFPGAGQAA SGGDNMCGGA RPFGEHRSTS 360
EGAASSVGGG DMDQSSAGNT STTRWSNSSR DPWLSSNSCN MDAHRLAGLS SPIENAEPCR 420
SSSSQVSNHE LSSPSLEFTL GRPDWQGADH D*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 2e-16 | 258 | 312 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-16 | 258 | 312 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-16 | 258 | 312 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-16 | 258 | 312 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU925398 | 0.0 | EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds. |
| GenBank | EU954667 | 0.0 | EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
