PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 317aa MW: 34873.6 Da PI: 5.8294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG318300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	57	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv G +W+++++ g+ R++k+c++rw +yl Pavir.2NG318300.1.p 57 KGPWTVEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 104 79****************************99**********97 PP
2	Myb_DNA-binding	55	1.9e-17	113	154	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++ +d++++lG++ W++Ia++++ gRt++++k++w+++ Pavir.2NG318300.1.p 113 LSAEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 154 589**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-19	48	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.789	52	104	IPR017930	Myb domain
SuperFamily	SSF46689	1.31E-26	54	151	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-11	56	106	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-13	57	104	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-7	59	104	No hit	No description
PROSITE profile	PS51294	27.114	105	159	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-25	106	159	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-16	109	157	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	113	154	IPR001005	SANT/Myb domain
CDD	cd00167	3.98E-12	114	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MACPPWNWLL LAWYFPHQAP RAPIPVHLHK RTRCYSLQLA ELEMGRQPCC DKVGLKKGPW 60 TVEEDQKLVS FLLNNGQCCW RAVPKLAGLL RCGKSCRLRW TNYLRPDLKR GLLSAEEEKT 120 VIDLHAELGN RWSKIASHLP GRTDNEIKNH WNTHIKKKLR KMGIDPVTHK PLQPALSAPP 180 QAEEEDKVAA AAAVSSEGVR NEAFSLSEVP MVDLLDDVVL PPCDLVAGAP PASNSGIDTA 240 CSPDQSSSSS SSPYSGSAAA SSCGSSVADG ECPEWLEWAE SMLLDDDAVT GPAPWAFEDP 300 FVTYQRIVLF DHQEAW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-28	55	159	5	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG318300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083735	1e-151	BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBank	BT085521	1e-151	BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBank	BT085625	1e-151	BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802265.1	1e-140	protein ODORANT1-like
TrEMBL	A0A2T7ES38	1e-139	A0A2T7ES38_9POAL; Uncharacterized protein
STRING	Pavir.Ba02150.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	4e-83	myb domain protein 20

Link Out ? help Back to Top
Phytozome	Pavir.2NG318300.1.p