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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG316000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 362aa MW: 37201.8 Da PI: 8.1774 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.5 | 3.9e-34 | 35 | 89 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve Pavir.2NG316000.1.p 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpTDPTSLKCAACGCHRNFHRRAVE 89 7***************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.0E-28 | 35 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 36 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.278 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-31 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.57E-16 | 204 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 205 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.9E-23 | 213 | 269 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEAMDVKYKP FMFPNGAAVK KVKPAAVAPA AGEPLYRECL KNHAASLGGH AVDGCGEFMP 60 SPGANPTDPT SLKCAACGCH RNFHRRAVEG SPPPPAPLAL PVLPSVLHGQ PHRGGEETPD 120 DRLPGAVDDS DSDSDGSEYD EERSVSPPPP PHHVPAPVAQ QPPPPPYFPS GPHMLLSLGS 180 GAPGAAVAAA AQRLPPAQLT PSSAPPPGAA MPRKRFRTKF TAEQKQRMQE LSERLGWRLQ 240 KRDEAIVDEW CRDIGVGKGV FKVWMHNNKH NFLGGHSARR SASSAPAGPG AGAAPLHAPI 300 ANAGAAAPSF NTSAITPPPP VLTSSPPSAS GFNINGAASS APTATAGHPD NVTGASSPQS 360 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-21 | 213 | 271 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3351 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG316000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063244 | 0.0 | BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds. | |||
GenBank | EU963746 | 0.0 | EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds. | |||
GenBank | JX428511 | 0.0 | JX428511.1 Zea mays subsp. mays clone pUT3109 ZHD2 ZF-HD type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698877.1 | 1e-170 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 1e-100 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A3L6T818 | 1e-175 | A0A3L6T818_PANMI; Zinc-finger homeodomain protein 9-like | ||||
STRING | Pavir.J22492.1.p | 1e-176 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-26 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG316000.1.p |