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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG286600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 341aa MW: 36892.9 Da PI: 10.2537 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG286600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 339.1 | 1.1e-103 | 1 | 340 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd..................mafl 61
mdddg rn+g+y+ + lglqlmss++ +rd+k ++ +++ ++ +++++rd m+f
Pavir.2NG286600.1.p 1 MDDDGGLGiRNWGFYDMK----GSLGLQLMSSMPaDRDTKSllpagaflqHHGHHNAPHQLHSHHARDsggggtsggmptepqsihMDFS 86
999999999******855....899********99******9*******988888888999999************************** PP
GAGA_bind 62 qrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqledsavelreeekle 133
+++++++ ++ ++r++k+l+ +v + +++p+g+++++++ ++ +++q +pql+ + +e + ++ +
Pavir.2NG286600.1.p 87 RNEAWVHP-SHHQHPREQKVLHARPVGPAGHvghpghgghpghgghavHHHPTGYGMIPDAPHAlQMMQV--QPQLQSQLEEPPPCKEED 173
********.9999***********99988778999*************9**********98765155555..566666555533333334 PP
GAGA_bind 134 .alpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
+p+++ ++ +k+++ +kkrqr+ +pk++k kk+kk ++++++ + +++ +r + +kk++++v+ng++lD s++P+PvCsCtGa++qC
Pavir.2NG286600.1.p 174 vPPPLVD-QSLVKTEPPVKKRQRGGQPKSPKPKKPKK-AAVPREDRAVNGHAPRGRGPKKTVGMVINGIELDLSNIPTPVCSCTGAPQQC 261
0445555.566667777888*****************.88999999999999************************************** PP
GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Y+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfvtir
Pavir.2NG286600.1.p 262 YRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVTIR 340
******************************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDDGGLGIR NWGFYDMKGS LGLQLMSSMP ADRDTKSLLP AGAFLQHHGH HNAPHQLHSH 60
HARDSGGGGT SGGMPTEPQS IHMDFSRNEA WVHPSHHQHP REQKVLHARP VGPAGHVGHP 120
GHGGHPGHGG HAVHHHPTGY GMIPDAPHAL QMMQVQPQLQ SQLEEPPPCK EEDVPPPLVD 180
QSLVKTEPPV KKRQRGGQPK SPKPKKPKKA AVPREDRAVN GHAPRGRGPK KTVGMVINGI 240
ELDLSNIPTP VCSCTGAPQQ CYRWGAGGWQ SACCTTSIST YPLPMNTKRR GARIAGRKMS 300
QGAFKKVLEK LVGEGYNLAN PIDLKTFWAK HGTNKFVTIR *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
