PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.2NG276500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HD-ZIP

Protein Properties

Length: 671aa MW: 72886.7 Da PI: 8.2822

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG276500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.2	7.8e-10	3	42	18	57
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++ +p+ ++++ L + +gL + Vk+WFqNrR kk Pavir.2NG276500.1.p 3 AYDQCTHPDPQAMQALGAMIGLAPKYVKFWFQNRRSLVKK 42 7999*******************************87765 PP
2	START	128	1.1e-40	149	368	4	205
HHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...... CS START 4 eeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla...... 77 + +++++ +a+ +ep+W+ + e n+ e++ +++++ + +ea r+ ++v + +a+lv++++d++ +W+et++ Pavir.2NG276500.1.p 149 KASMEQFLVLATKGEPMWFPAAdggEVMNYVEYRAELSPAMIglrrpegFAVEATRDAAMVRGSAAELVSIFMDTA-RWSETFTgvvasv 237 678999**************999889999999999997779*****************************.***887777 PP .EEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEE CS START 78 .kaetlevissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskv 164 + ++ + +g +qlm+ae+ + sp vp R + ++Ry++ + +w+++dvSvd ++ + ++ ++llpSg+lie++sngh+kv Pavir.2NG276500.1.p 238 vAGDVCVHCFADGQIQLMNAEMWVQSPCVPnRTVKILRYCKLVAERQWAVMDVSVDGIFGQQVlPARYMGCRLLPSGCLIEDMSNGHCKV 327 777777777777***************************************9766665568********************* PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 tw+ h+++++ + + +r+l +g+a ga +w+a lqrq+e Pavir.2NG276500.1.p 328 TWIVHAEYDETTMPPTFRPLFLNGQALGAHRWLASLQRQRE 368 *************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.9	1	43	IPR001356	Homeobox domain
CDD	cd00086	3.11E-6	2	43	No hit	No description
Pfam	PF00046	1.8E-7	2	42	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-8	3	42	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-8	3	45	IPR009057	Homeodomain-like
PROSITE profile	PS50848	29.872	137	372	IPR002913	START domain
SMART	SM00234	2.5E-18	146	369	IPR002913	START domain
CDD	cd08875	1.57E-74	148	368	No hit	No description
Pfam	PF01852	9.1E-34	149	368	IPR002913	START domain
SuperFamily	SSF55961	2.96E-19	193	364	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MAAYDQCTHP DPQAMQALGA MIGLAPKYVK FWFQNRRSLV KKKDQLEQNQ QMQQVNASLK 60 AENRSLRKAV ETQRCVKCDG KIPPFNPLLE KQRLLAKNAQ LKDEILRVSA VHTKIIRDSA 120 LAQPVPWFSS SSSSSSSDAG REALLRHAKA SMEQFLVLAT KGEPMWFPAA DGGEVMNYVE 180 YRAELSPAMI GLRRPEGFAV EATRDAAMVR GSAAELVSIF MDTARWSETF TGVVASVVAG 240 DVCVHCFADG QIQLMNAEMW VQSPCVPNRT VKILRYCKLV AERQWAVMDV SVDGIFGQQV 300 LPARYMGCRL LPSGCLIEDM SNGHCKVTWI VHAEYDETTM PPTFRPLFLN GQALGAHRWL 360 ASLQRQREHA AALYSSLYPG NNNAAEAAGM LKLAQQMMAS FYAAVSGPIP RTPATTGIIN 420 DWFGSIGTGV ERFDAAVRMV TWEKPGGVKK PDPAEKQDFR FSRKILAEKF FLGGGAAGEP 480 ASWYLSATTT LRLPCTPPER VFGYLRDEQR RGEWDFVFAN GAAVQELRSV STGYLSGNVV 540 SILSNMTDGT KGRVLILQEA RTDASGSLVV YTPIGEEAMA MDAAMAAAAA SSFPTPSGFA 600 ILPDGRGSKA RHAPSTSSSA PVLRDGATGG SLVTMAYQVL LPGPPPDTAG AIDDIGKLIC 660 HVMETIKIIF *

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MAAYDQCTHP DPQAMQALGA MIGLAPKYVK FWFQNRRSLV KKKDQLEQNQ QMQQVNASLK  60
AENRSLRKAV ETQRCVKCDG KIPPFNPLLE KQRLLAKNAQ LKDEILRVSA VHTKIIRDSA  120
LAQPVPWFSS SSSSSSSDAG REALLRHAKA SMEQFLVLAT KGEPMWFPAA DGGEVMNYVE  180
YRAELSPAMI GLRRPEGFAV EATRDAAMVR GSAAELVSIF MDTARWSETF TGVVASVVAG  240
DVCVHCFADG QIQLMNAEMW VQSPCVPNRT VKILRYCKLV AERQWAVMDV SVDGIFGQQV  300
LPARYMGCRL LPSGCLIEDM SNGHCKVTWI VHAEYDETTM PPTFRPLFLN GQALGAHRWL  360
ASLQRQREHA AALYSSLYPG NNNAAEAAGM LKLAQQMMAS FYAAVSGPIP RTPATTGIIN  420
DWFGSIGTGV ERFDAAVRMV TWEKPGGVKK PDPAEKQDFR FSRKILAEKF FLGGGAAGEP  480
ASWYLSATTT LRLPCTPPER VFGYLRDEQR RGEWDFVFAN GAAVQELRSV STGYLSGNVV  540
SILSNMTDGT KGRVLILQEA RTDASGSLVV YTPIGEEAMA MDAAMAAAAA SSFPTPSGFA  600
ILPDGRGSKA RHAPSTSSSA PVLRDGATGG SLVTMAYQVL LPGPPPDTAG AIDDIGKLIC  660
HVMETIKIIF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG276500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801379.1	0.0	homeobox-leucine zipper protein ROC6-like
TrEMBL	A0A3L6QW21	0.0	A0A3L6QW21_PANMI; Uncharacterized protein
STRING	Pavir.Ba02412.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	1e-93	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Pavir.2NG276500.1.p