PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ERF

Protein Properties

Length: 138aa MW: 15018.3 Da PI: 8.8431

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG242800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.5	2.1e-20	9	61	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ Pavir.2NG242800.1.p 9 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 61 69******.******432...25***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.73E-27	9	70	No hit	No description
Pfam	PF00847	2.9E-14	9	60	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-32	10	74	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.29E-23	10	69	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.9E-31	10	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.644	10	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-12	11	22	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-12	34	50	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MDGGEGEPTK YRGVRRRPWG KYAAEIRDSS RHGVRIWLGT FDTAEEAARA YDRSAYSMRG 60 AAAVLNFPED ARVYAAAASR GSGSGSSSSS SSSRQQQQQP PPGGRDVIEF EYLDDEVLQE 120 MLRNHDADGS SSARKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-38	1	117	1	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG242800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804456.1	2e-68	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LSX0	1e-37	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A3L6T9N0	6e-71	A0A3L6T9N0_PANMI; Uncharacterized protein
STRING	Pavir.Bb01308.1.p	1e-66	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	2e-35	ERF family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG242800.1.p

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]