PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG240000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 556aa MW: 61443.8 Da PI: 8.0296

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG240000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Pavir.2NG240000.1.p 66 KCTKCSREFCSSINFRRHTRVH 87 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	65	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MSASRKSSHV TTKDSAETAR DIIPTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKCMSCRK 60 QVQLDKCTKC SREFCSSINF RRHTRVHRRT LKLDKDFPKN RDHLAAFWNK LTVDEASTVL 120 SSNNVVVEGV TGSSILTTLS AWMCKPGYAS LPMAYARAGS ELLDLIQTKV SMQLPVSSND 180 LFSVLGEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD 240 KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD 300 TSCSPGIQSF KAISDPDLYE QEKSQYIQFP GPVTSETGNG FNVDLSVEYV SCDSVPEMDK 360 GVVLRKQVIS RHHLGITEKL AETNFVSGSA VASKQAALAR PSNYRDANVC SLPNRNKTWA 420 RKVPAEIGNQ CPKHGLDVDD EHNMAPSKNS RVLIGSISVA IEDGNEHLKD SRSKNERVPP 480 SSKIMKHASV NVNCSCFSSM TDESSHSTCC SADFAEGEHL RRTMFSSKEA TSFRSQRWKE 540 AIAADHVKLV LCHDK*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MSASRKSSHV TTKDSAETAR DIIPTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKCMSCRK  60
QVQLDKCTKC SREFCSSINF RRHTRVHRRT LKLDKDFPKN RDHLAAFWNK LTVDEASTVL  120
SSNNVVVEGV TGSSILTTLS AWMCKPGYAS LPMAYARAGS ELLDLIQTKV SMQLPVSSND  180
LFSVLGEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD  240
KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD  300
TSCSPGIQSF KAISDPDLYE QEKSQYIQFP GPVTSETGNG FNVDLSVEYV SCDSVPEMDK  360
GVVLRKQVIS RHHLGITEKL AETNFVSGSA VASKQAALAR PSNYRDANVC SLPNRNKTWA  420
RKVPAEIGNQ CPKHGLDVDD EHNMAPSKNS RVLIGSISVA IEDGNEHLKD SRSKNERVPP  480
SSKIMKHASV NVNCSCFSSM TDESSHSTCC SADFAEGEHL RRTMFSSKEA TSFRSQRWKE  540
AIAADHVKLV LCHDK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	274	ERKRMKKL
2	272	282	KKLRQKEQRLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7128	7e-92	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG240000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799780.1	0.0	uncharacterized protein LOC112879646 isoform X2
TrEMBL	A0A2T8KP27	0.0	A0A2T8KP27_9POAL; Uncharacterized protein
STRING	Pavir.Ba02682.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-85	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG240000.1.p