PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG238700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 586aa MW: 64529 Da PI: 7.0085

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG238700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Pavir.2NG238700.1.p 71 KCTKCSREFCSSINFRRHTRVH 92 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MSASWKSSHV TTKDGAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKYLPGWP 60 LFSPPKVQLD KCTKCSREFC SSINFRRHTR VHRRTLKVDK DFPKNRDHLA AFWNKLTVDE 120 ASTVLSLSNV VVEGVSGSSI LTTLSSWMCK PGYASLPMAY ARAGSELLDL IQTKISMQLP 180 VSSNELFSVL DEASEKTFLC TNTAACIQKF LFDGEANKIA TELKNVVACA SYMLEQKLVE 240 AWCADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRLKDL KDENVVIQLP 300 EIMDDTTCSP GIQSFKAISD PDLNEQEKSQ YIQFPAPVTS ETGNGFNVDL SVEDVSCDSA 360 PEMDKGVVLR KQVISRHHLG RTEKLAENSF VSGSAVVSKQ AALARPSNYR DANVCSSPNR 420 NKTWARKVPA EIGNQCPKHG LDVDDEHNMA LSKNSRVLIG SICVAIEDGN EHLKDSRSKN 480 DPVPPCSKIV KHASVVLQPV THKENRNEGI SNSDGNSAPA DENPSCFSSM TDESSHSTCC 540 SADFAEGEHL RRTMFSSKEA TSFLSQRWKE AIAADHVKLV LCHDK*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MSASWKSSHV TTKDGAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKYLPGWP  60
LFSPPKVQLD KCTKCSREFC SSINFRRHTR VHRRTLKVDK DFPKNRDHLA AFWNKLTVDE  120
ASTVLSLSNV VVEGVSGSSI LTTLSSWMCK PGYASLPMAY ARAGSELLDL IQTKISMQLP  180
VSSNELFSVL DEASEKTFLC TNTAACIQKF LFDGEANKIA TELKNVVACA SYMLEQKLVE  240
AWCADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRLKDL KDENVVIQLP  300
EIMDDTTCSP GIQSFKAISD PDLNEQEKSQ YIQFPAPVTS ETGNGFNVDL SVEDVSCDSA  360
PEMDKGVVLR KQVISRHHLG RTEKLAENSF VSGSAVVSKQ AALARPSNYR DANVCSSPNR  420
NKTWARKVPA EIGNQCPKHG LDVDDEHNMA LSKNSRVLIG SICVAIEDGN EHLKDSRSKN  480
DPVPPCSKIV KHASVVLQPV THKENRNEGI SNSDGNSAPA DENPSCFSSM TDESSHSTCC  540
SADFAEGEHL RRTMFSSKEA TSFLSQRWKE AIAADHVKLV LCHDK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	ERKRMKKL
2	277	287	KKLRQKEQRLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7128	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG238700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799780.1	0.0	uncharacterized protein LOC112879646 isoform X2
TrEMBL	A0A2T7EPA3	0.0	A0A2T7EPA3_9POAL; Uncharacterized protein
STRING	Pavir.Bb01437.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	5e-87	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG238700.1.p