PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG227600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 263aa    MW: 30004.6 Da    PI: 6.6014
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG227600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.47.5e-16129216190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleH 85 
                          +fY++YA+++GF+ +k++++ +       +r f+C++ gk e  kk++ ++++ +++++t+C a++k+k ++     +++ e+++++l+H
  Pavir.2NG227600.2.p 129 EFYCTYAEKAGFEPKKANKSGN-------TRYFRCNRFGKGEYYKKDEAERKTGKTSKKTSCLAMIKLKFRRdeesnEKVAEIEQVRLDH 211
                          6************999875555.......789***************888888999************9776554445667899999*** PP

                 FAR1  86 nHela 90 
                          nH l 
  Pavir.2NG227600.2.p 212 NHVLL 216
                          **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-12129217IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MATRRLQFGE VGEQGDVPVR KEQEVIVEEA TRCNLGMQQD VSENQGIQGG VSNERRMNID  60
EGIHTPHASS MTEGEEGCSR NIITPPATVD PSDIQTPNPG HIYTHRDDMD EAWIPRVGRC  120
FKSEEEAHEF YCTYAEKAGF EPKKANKSGN TRYFRCNRFG KGEYYKKDEA ERKTGKTSKK  180
TSCLAMIKLK FRRDEESNEK VAEIEQVRLD HNHVLLPKPT ETKQMRAHKN KDPLLLDYVD  240
DLQANDVPNH CVRNIIREGQ RI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG227600.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J40882.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-09FAR1-related sequence 10