PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG227600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 584aa MW: 67588.4 Da PI: 7.5707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG227600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.4	3e-15	129	216	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleH 85 +fY++YA+++GF+ +k++++ + +r f+C++ gk e kk++ ++++ +++++t+C a++k+k ++ +++ e+++++l+H Pavir.2NG227600.1.p 129 EFYCTYAEKAGFEPKKANKSGN-------TRYFRCNRFGKGEYYKKDEAERKTGKTSKKTSCLAMIKLKFRRdeesnEKVAEIEQVRLDH 211 6**********999875555.......789***********888888999********9776554445667899999* PP FAR1 86 nHela 90 nH l Pavir.2NG227600.1.p 212 NHVLL 216 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-11	129	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-29	339	430	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MATRRLQFGE VGEQGDVPVR KEQEVIVEEA TRCNLGMQQD VSENQGIQGG VSNERRMNID 60 EGIHTPHASS MTEGEEGCSR NIITPPATVD PSDIQTPNPG HIYTHRDDMD EAWIPRVGRC 120 FKSEEEAHEF YCTYAEKAGF EPKKANKSGN TRYFRCNRFG KGEYYKKDEA ERKTGKTSKK 180 TSCLAMIKLK FRRDEESNEK VAEIEQVRLD HNHVLLPKPT ETKQMRAHKN KDPLLLDYVD 240 DLQANDVPNH CVRNIIRGMH GGEENIAMTD KDLENRRAAN MRAEHANDVN KLMEFFKDCE 300 AENPQFRWEA KLDTNGCIHS IFWSHASMQG DYIDFGDAMT FDTTYKTNIY DKPLAMFVGS 360 DHHLHNTVFG CALLGDEKQE TFEWVFKAFK KCMVKNRTKC ILTDEDTAME AAIKKEFPGI 420 THKICRWHVV NRLSSELNKL YERYKKRDFK QKFNSVLNHP LTPWEFEAAW NNLIAEFKLE 480 ENTALQSLYD QRKRYIPVYF KGDYCGRMAS TQRSESTNFI MKKCFVGKKT ALHRFAKQVL 540 NFLHTRRMKE GAETYHGTRQ DPYKDQSGIR DTNGKILQLE IVF*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MATRRLQFGE VGEQGDVPVR KEQEVIVEEA TRCNLGMQQD VSENQGIQGG VSNERRMNID  60
EGIHTPHASS MTEGEEGCSR NIITPPATVD PSDIQTPNPG HIYTHRDDMD EAWIPRVGRC  120
FKSEEEAHEF YCTYAEKAGF EPKKANKSGN TRYFRCNRFG KGEYYKKDEA ERKTGKTSKK  180
TSCLAMIKLK FRRDEESNEK VAEIEQVRLD HNHVLLPKPT ETKQMRAHKN KDPLLLDYVD  240
DLQANDVPNH CVRNIIRGMH GGEENIAMTD KDLENRRAAN MRAEHANDVN KLMEFFKDCE  300
AENPQFRWEA KLDTNGCIHS IFWSHASMQG DYIDFGDAMT FDTTYKTNIY DKPLAMFVGS  360
DHHLHNTVFG CALLGDEKQE TFEWVFKAFK KCMVKNRTKC ILTDEDTAME AAIKKEFPGI  420
THKICRWHVV NRLSSELNKL YERYKKRDFK QKFNSVLNHP LTPWEFEAAW NNLIAEFKLE  480
ENTALQSLYD QRKRYIPVYF KGDYCGRMAS TQRSESTNFI MKKCFVGKKT ALHRFAKQVL  540
NFLHTRRMKE GAETYHGTRQ DPYKDQSGIR DTNGKILQLE IVF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG227600.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	K3YLY1	1e-154	K3YLY1_SETIT; Uncharacterized protein
STRING	Pavir.J40882.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-58	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG227600.1.p