|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.2NG201900.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bZIP |
Protein Properties |
Length: 314aa MW: 33308 Da PI: 8.9908 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG201900.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 75.6 | 6.8e-24 | 205 | 267 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el++lkk ++ +++e+
Pavir.2NG201900.1.p 205 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 267
89*********************************************************9998 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MQAYYAAGGQ PYAWHAAQQH MLAAAAAAAG APYGTPMPFH VSFHPAYYAH AAMATSVPYT 60 AGEALAVAEG KSKRKSSGAP SVGSASGSSN GGSEEASEKR DASAGHKLLP SAKRRKSTGA 120 NGQGEPSQAA IMQDVAAEAR SAAKRPGKLS VSTTEMAAIS NARPNLNIGI DLWSNSPVKA 180 ETSGPIQINA AAPSHDVPLS HMQDERELKR ERRKQSNRES ARRSRLRKQQ ECEELAQKVT 240 DLTAINGTLR SELDQLKKAC EDMEAENSQL MGEMEQAEAP SVVTTLSMHI DTAKVHHGKS 300 DQHRDKNNND SKG*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 221 | 227 | RRSRLRK |
2 | 221 | 228 | RRSRLRKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT1G32150.1 | 1e-27 | basic region/leucine zipper transcription factor 68 |