PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG192200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 360aa    MW: 38805.1 Da    PI: 7.3903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG192200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05171190120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C  C+k+F+r  n++ H+
  Pavir.2NG192200.1.p 171 FSCAVCNKTFNRFNNMQMHM 190
                          89*****************9 PP
2zf-C2H213.70.00019261283123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C  Cgk+F  + + ++H +++
  Pavir.2NG192200.1.p 261 YACRRCGKRFAVRGDWRTHEKNC 283
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-5166192No hitNo description
Gene3DG3DSA:3.30.160.604.0E-5171190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055171198IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SMARTSM00355230224256IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6247281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.93E-6247281No hitNo description
PROSITE profilePS501578.704261281IPR007087Zinc finger, C2H2
SMARTSM0035558261281IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MHSYRAMHPY THHPYQHHAA VPQGGKQQHS GGNDDDDQSM LLLSLWPPGH HHASSACSSS  60
PSITSTATSM SMAAASYPWL GHHQSHYGNG SCGGGGSSSS SHSSFLFHEQ PAEPDVSISL  120
SIAPPCAGAG FAAPAVPSTV TTTVAPGGSS QVPSQYWIPS AAEILVGSTQ FSCAVCNKTF  180
NRFNNMQMHM WGHGSQYRKG SESLRGAITV GTAPPASLMR LPCYCCAEGC RNNIEHPRAR  240
PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS  300
LKDHVRSFGG GHAPHIVETS VAAEDDEEDD DDHDDLMLHM VDDNGSGAAG ADPTDMVVV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG192200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956529.10.0zinc finger protein WIP6
SwissprotQ9FX684e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A368Q0C21e-179A0A368Q0C2_SETIT; Uncharacterized protein
STRINGPavir.Ba03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.18e-97C2H2-like zinc finger protein