PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG183000.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 277aa    MW: 30138.8 Da    PI: 7.6668
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG183000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1513.2e-16206249548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++Lkk+
  Pavir.2NG183000.5.p 206 RRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLKKQ 249
                          69***************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-12202270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.622204249IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-15206250No hitNo description
SuperFamilySSF579592.25E-12206251No hitNo description
PfamPF001703.1E-14206249IPR004827Basic-leucine zipper domain
CDDcd147072.67E-26206251No hitNo description
PROSITE patternPS000360209224IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNFDELLKSV LPDGVDPNGT VTGKPDTASS LQRQGSIMMP PQLSKKTVDE VWKGIQDGPG  60
TSATDGGRHR RERQPTLGEM TLEEFLVKAG VVSEGLMKDS DDLPSNMNTF GSNVVAGGGS  120
GLNSGAQWLQ QYQQQALESR QPSLVGSYMA SQLSPQPLSV ATGAMLDSIY SDGQITSPTV  180
GAFSDPQTPG RKRGALGEVV DKVIERRQKR MIKNRESAAR SRARKQAYTN ELENKVSHLE  240
EENERLKKQK EFDEILSSAL PPEPKYQLRR TSSAAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203400.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG183000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808690.11e-179ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
SwissprotQ9LES31e-69AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2T7ECB11e-178A0A2T7ECB1_9POAL; Uncharacterized protein
STRINGPavir.J34085.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.18e-69ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]